Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46960 1988 / 0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G59760 551 / 6e-177 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G70070 259 / 1e-70 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) AT2G06990 233 / 1e-62 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT4G32700 81 / 5e-15 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) AT5G61140 75 / 5e-13 U5 small nuclear ribonucleoprotein helicase (.1.2) AT1G20960 72 / 2e-12 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT2G42270 71 / 7e-12 U5 small nuclear ribonucleoprotein helicase (.1) AT3G27730 68 / 4e-11 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) AT4G14790 54 / 1e-06 ATSUV3, EDA15 embryo sac development arrest 15, ATP-dependent RNA helicase, mitochondrial (SUV3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228700 [exp] 439 / 1e-134 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.006G078000 [exp] 401 / 8e-121 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.018G146001 [exp] 388 / 8e-121 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.010G038500 [exp] 254 / 4e-69 AT1G70070 1502 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Potri.018G036600 [exp] 83 / 1e-15 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Potri.012G097300 [exp] 71 / 5e-12 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.015G056501 [exp] 70 / 1e-11 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.015G095500 [exp] 70 / 1e-11 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.001G348200 [exp] 67 / 9e-11 AT3G27730 1542 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017528 [exp] 2082 / 0 AT3G46960 1971 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10024454 [exp] 500 / 7e-157 AT1G59760 1557 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10007442 [exp] 482 / 1e-150 AT1G59760 1523 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10027599 [exp] 410 / 6e-124 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10022944 [exp] 297 / 5e-89 AT2G06990 713 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10013294 [exp] 249 / 3e-67 AT1G70070 1372 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10022945 [exp] 167 / 2e-43 AT2G06990 887 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10030818 [exp] 131 / 1e-30 AT1G70070 1389 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10022115 [exp] 84 / 7e-16 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10002528 [exp] 69 / 4e-13 AT3G46960 69 / 2e-14 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF08148 [poplar] [flax] DSHCT DSHCT (NUC185) domain CL0023 [poplar] [flax] PF13234 [poplar] [flax] rRNA_proc-arch rRNA-processing arch domain
Representative CDS sequence Show only first row Show all	>Potri.009G041200.5 pacid=42771833 polypeptide=Potri.009G041200.5.p locus=Potri.009G041200 ID=Potri.009G041200.5.v4.1 annot-version=v4.1 ATGGACCGCATCCAGGCAACAAACGAGCTCGCTTTCCGTGTCGCCTTCTCCGGCCACAGTGGCCACCTCAGGGTCGAGCCACTCTCCACCGTGGAGCGCA CCAACCCCGTGAAATCTCTTCCTGACTTCATCCTTCCCCCTGCATTTCCCAGGGAAACACAAGAATCGATAAAGGAACATATAGAGGAGAAATATCTCTT GCCGAGATTAGATCCTGATGAATTTTCAGCAGAAAAAGCTGGTAGGCAGTGGCATTTTGACTGGTTTGAGATGGCAAAGCTGCCACTAGAGCCTTCATTG CCACGGTCTGTGGTAGTTCCGACATGGGAGGTACCATTCCGACGGAAAAAGAAGGGATCGGTTGAAGGAATGTGGGAACCCAATTCTGTACAGGTGGATG TGTCAGAATTGTCACCCGGAGCTCAAGATTCTGCTTCTTTGCCACGTGTGGCTGGGCCTGCAAAAGATTTTGTAAGAGGAAGCATAAACAACCGCCCTTT TCGTCCTGGAGGTTTGGAGGAATCTCAAAATGTGGACAGACTTCTTCCTGATGGCGCTACTAATGGTGAATGGGTGCGGGAGGTGTTGAATGGTGGTCCA GCTCAGGCAGTTGCACCCAGCCTTAAGCAAGGATTAGACCTCGGGGATCTTAAGGCATTTCCTTGCACGTGGAATGTTTACAAGGACGAAGGTTCACTCA ACAACACATCAGATGAAAAATTGAGTGAGTTATCTGTACAGTTTGATGACTTGTTCAAGAAAGCCTGGGAAGAGGATGATGTGGCAGAATATGAGGGAGA TGCTCATTTATCAGAAGAGGATTCAACAAATCCAGATGCTGAAGTGAGCCAGGTTGATTTATCCAGCAGCGCGGCTAAGTCTCAATTACATGCATTAGAT GAGATTTTGTTTGTTGAATCAGGTGCATTGATGCCAACATCAGGTGGAACTAGTGACAATGGTGGACACCAGCAGAAAGAGGCCTCAGCTTTCACTGGTA GTAGTGAAGGGATTGCAGAACACTTCTATCAACTAGTTCCTGACATGGCACTTAGTTTTCCTTTTGAACTGGATGCATTCCAAAAGGAGGCTATATACTA TCTGGAAAAGGGAGACTCTGTTTTTGTGGCAGCTCATACATCAGCTGGGAAGACGGTTGTTGCAGAATATGCATTTGCTTTGGCATCAAAACACTGTACC AGAGCTGTCTATACTGCTCCAATTAAAACAATTAGCAACCAAAAGTATCGGGACTTCTGTGGAAAATTTGATGTTGGTCTTCTCACTGGTGATGTTAGTG TGAGGCCAGAGGCTTCTTGTCTTATCATGACCACTGAAATATTGAGGTCAATGCTCTACCGGGGTGCTGATATTATACGAGATATTGAATGGGTTATATT TGATGAAGTCCACTATGTCAATGATGTTGAAAGAGGTGTTGTATGGGAAGAAGTTATAATCATGCTTCCGAGGCATGTGAATATTGTCCTCCTTTCTGCC ACAGTACCAAACACAGTTGAATTTGCTGACTGGATCAGCCGGACAAAGCAGAAGACAATCCGTGTTACTGGAACTACAAAAAGGCCGGTCCCTTTGGAGC ACTGCCTATTTTATTCTGGAGAACTACACAGAATATGTGAAGGCGAAATTTTTATGCCTCAAGGTTTGAAAACTGCTAAATATGCATTCAAGAAAAATAA TTCTACTACAGTGGGTGGCGGTCCTGGAGCATACACAGGGCCTTCTGTAACACGTGATGGGGTTCGGGGCCAGAAACGTGACAACCAAAGTCATAGCAAA CAAAACAAGCATGGTTCCCAGAATTTGGGGGCATTCTCTGGGACTAGTTGGGGAAATCAAAATAATGGAGGTGGCCAAAATAACTGGAGGTCATGGAGAT TAGAGGCCTCTTTGTGGTTGCAGCTTGTTAGCAAGCTTTTGAAGAATTCTCTATTGCCTGTAGTTATATTTTGTTTCTCAAAGAATCGATGTGATAAATC AGCTGACAGTTTGTCTGGGACTGATCTCACTAGTAGTTCTGAGAAAAGCGAAATTCGTGTTTTCTGTGACAAAGCATTCTCAAGACTAAAGGGATCAGAC CGCAATTTACCACAGATTGTCAGAGTTCGGAGCCTTCTTAGCAGAGGGATTGCTGTGCATCATGCAGGGCTGCTTCCCATTGTTAAGGAAGTCGTTGAAA TGCTTTTCTGTCGTGGTGTGATTAAGGTATTATTTTCAACGGAGACTTTTGCAATGGGCGTTAATGCCCCAGCTAGAACGGTTGTATTTGATACGCTAAG AAAGTTTGATGGAAAGGAATTTAGACAATTACTACCCGGGGAGTACACTCAAATGGCTGGTCGTGCTGGCAGAAGAGGAATTGACAAAATTGGCACAGTT GTAGTACTGTGCCGCGATGAAATTCCAGAAGAGAGCGATTTGAAACGTGTTATAGTTGGAAGTGCTACCAGGCTTGAATCCCAGTTTCGATTGACTTATA TTATGATCTTGCATCTCCTCCGTGTTGAAGAATTGAAGGTGGAAGATATGTTAAAAAGAAGTTTTGCAGAGTTCCGTTCTCAGAAACAACTTCCTGAACA GCAAAAAGTTCTGATGCGGAAGCTTGCTCAGCCTGCCAAAACTGTTGAATGTATAAAAGGTGAGCCAACAATTGAAGAATACTATGACCTGTACTTAGAA GCTGAAAAATATGGCAACCAGGTATCAGAGGCTGTCATGCAGTCCCCTCATGCCCAAACATTTCTTACACCTGGAAGAGTTGTCGTTGTGAAATCACTAT CGGCACAGGATCACTTACTTGGAGTGGTAGTGAAAGTGACATCAGCCAGTATGAAGCAATACATAGTTTTGGTGCTGAAACCTGATGCTCCATCAGTAAG CAGTAACTTGCAAGATAAAAAAAGTGCTGATTTCCAACAAGGTTATGTGCTGATGCCAAAATCAAAGCGTAGTTGTGACGAAGAGTACTTCTCTTCTCTC ACTAATCGCAAGGGATCAGGCACCATCAAGATAGAACTACCATACCAAGGTGTTGCTGCCGGGATCAATTATGAAGTTAGAGGAATTGAAAGCAAAGAAT TCTTATGCATATGCAATCGTAAAATAACAATTGACCAAGTTCGGCTTCTTGAAGATGGTAGCAATGCTGCTTTCTCTAAGACAGTTCAGCAGCTGTTGGA AACAAAAAGTGACGGAAATAAATATCCTCCTGCACTAGATCCGCTGAAAGAGCTGAAGTTGAAAGATGTGAATCTTGTGGAAGCCTACCACAAATGGACA AGCCTGCTACAAAAGATGGCATCAAATAAGTGTCATGGGTGTATAAAATTGGAGGAGCACATTAGCTTGGCAAAAGAGATAAAGAGGCATAAAGAGGAAG TCAGTAACCTGCAATTCCAAATGTCAGATGAAGCACTCCAACAGATGCCAGACTTTCAGGGCCGGATATATGTTCTGAAGGAAATTGGCTGTATAGATGG TGACCTTGTAGTTCAAATTAAAGGCCGTGTTGCATGTGAGATGAATTCAGGGGAGGAGTTGATATGCACCGAGTGTTTATTTGAGAATCAACTTGATGAT CTGGAACCTGAAGAAGCGGTGGCAATAATGTCTGCTTTTGTGTTTCAGCAGAGGAAAACTTCTGAGCCTTCACTTACTCCCAGGCTGTCTCAAGCTAAAA AGAGGTTGTACAGCACAGCAATAAGACTTGGAGAGCTTCAATCAAATTACAATATACAAGTAAACCCTGAGGAGTATGCCAATGAGAATCTTAAGTTCGG TTTAGTTGAAGTTGTGTACGAGTGGGCAAAGGGTACTCCATTTGCTGATATATGTGAACTCACTGATGTTCCTGAAGGCCTGATAGTGCGCACAATTGTC AGATTGGACGAGACATGTCGTGAATTTAAGAATGCTGCAGCTATCATGGGTAATTCTGCCGTCTACAAGAAAATGGAATCTGCTTCGAACGCCATAAAGC GTGACATAGTTTTTGCAGCTAGTTTGTATGTTACGGGAGTGTAA
AA sequence Show only first row Show all	>Potri.009G041200.5 pacid=42771833 polypeptide=Potri.009G041200.5.p locus=Potri.009G041200 ID=Potri.009G041200.5.v4.1 annot-version=v4.1 MDRIQATNELAFRVAFSGHSGHLRVEPLSTVERTNPVKSLPDFILPPAFPRETQESIKEHIEEKYLLPRLDPDEFSAEKAGRQWHFDWFEMAKLPLEPSL PRSVVVPTWEVPFRRKKKGSVEGMWEPNSVQVDVSELSPGAQDSASLPRVAGPAKDFVRGSINNRPFRPGGLEESQNVDRLLPDGATNGEWVREVLNGGP AQAVAPSLKQGLDLGDLKAFPCTWNVYKDEGSLNNTSDEKLSELSVQFDDLFKKAWEEDDVAEYEGDAHLSEEDSTNPDAEVSQVDLSSSAAKSQLHALD EILFVESGALMPTSGGTSDNGGHQQKEASAFTGSSEGIAEHFYQLVPDMALSFPFELDAFQKEAIYYLEKGDSVFVAAHTSAGKTVVAEYAFALASKHCT RAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSVRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHVNIVLLSA TVPNTVEFADWISRTKQKTIRVTGTTKRPVPLEHCLFYSGELHRICEGEIFMPQGLKTAKYAFKKNNSTTVGGGPGAYTGPSVTRDGVRGQKRDNQSHSK QNKHGSQNLGAFSGTSWGNQNNGGGQNNWRSWRLEASLWLQLVSKLLKNSLLPVVIFCFSKNRCDKSADSLSGTDLTSSSEKSEIRVFCDKAFSRLKGSD RNLPQIVRVRSLLSRGIAVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGIDKIGTV VVLCRDEIPEESDLKRVIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFRSQKQLPEQQKVLMRKLAQPAKTVECIKGEPTIEEYYDLYLE AEKYGNQVSEAVMQSPHAQTFLTPGRVVVVKSLSAQDHLLGVVVKVTSASMKQYIVLVLKPDAPSVSSNLQDKKSADFQQGYVLMPKSKRSCDEEYFSSL TNRKGSGTIKIELPYQGVAAGINYEVRGIESKEFLCICNRKITIDQVRLLEDGSNAAFSKTVQQLLETKSDGNKYPPALDPLKELKLKDVNLVEAYHKWT SLLQKMASNKCHGCIKLEEHISLAKEIKRHKEEVSNLQFQMSDEALQQMPDFQGRIYVLKEIGCIDGDLVVQIKGRVACEMNSGEELICTECLFENQLDD LEPEEAVAIMSAFVFQQRKTSEPSLTPRLSQAKKRLYSTAIRLGELQSNYNIQVNPEEYANENLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIV RLDETCREFKNAAAIMGNSAVYKKMESASNAIKRDIVFAASLYVTGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	0	1
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.013G033800 [exp]	1.41	0.8402
AT3G17920			Outer arm dynein light chain 1...		Potri.012G045300 [exp]	3.00	0.8445
AT3G09760			RING/U-box superfamily protein...		Potri.006G129000 [exp]	3.74	0.7768
AT1G31840			Tetratricopeptide repeat (TPR)...		Potri.015G036400 [exp]	5.29	0.8304
AT1G48950			C3HC zinc finger-like (.1)		Potri.015G052400 [exp]	5.47	0.8212
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.010G099400 [exp]	6.00	0.7602
AT3G06920			Tetratricopeptide repeat (TPR)...		Potri.010G014100 [exp]	6.48	0.8320
AT5G10900			Calcineurin-like metallo-phosp...		Potri.001G196600 [exp]	6.48	0.8177
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.006G264200 [exp]	6.70	0.8282
AT5G35930			AMP-dependent synthetase and l...		Potri.019G043800 [exp]	7.41	0.7962

Compare expression of checked genes

Potri.009G041200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.