Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07360 628 / 0 C3HZnF MAC5A MOS4-associated complex subunit 5A, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT2G29580 603 / 0 C3HZnF MAC5B MOS4-associated complex subunit 5B, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT5G07060 424 / 3e-146 C3HZnF MAC5C MOS4-associated complex subunit 5C, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2) AT5G04210 113 / 6e-29 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT1G49600 63 / 2e-10 ATRBP47A RNA-binding protein 47A (.1) AT1G47490 60 / 2e-09 ATRBP47C RNA-binding protein 47C (.1.2) AT1G47500 60 / 3e-09 ATRBP47C' RNA-binding protein 47C' (.1) AT5G54900 54 / 1e-07 ATRBP45A RNA-binding protein 45A (.1) AT3G19130 53 / 2e-07 ATRBP47B RNA-binding protein 47B (.1) AT1G11650 52 / 7e-07 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G041400 [exp] 608 / 0 AT1G07360 379 / 1e-128 MOS4-associated complex subunit 5A, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.009G105300 [exp] 61 / 1e-09 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.002G128100 [exp] 60 / 2e-09 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.014G034600 [exp] 60 / 2e-09 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.004G143400 [exp] 58 / 8e-09 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G054400 [exp] 54 / 1e-07 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G138400 [exp] 49 / 5e-06 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G423400 [exp] 49 / 8e-06 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G220600 [exp] 46 / 4e-05 AT3G56860 232 / 1e-70 UBP1-associated protein 2A (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037244 [exp] 711 / 0 AT1G07360 616 / 0.0 MOS4-associated complex subunit 5A, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Lus10020512 [exp] 710 / 0 AT1G07360 633 / 0.0 MOS4-associated complex subunit 5A, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Lus10035658 [exp] 706 / 0 AT1G07360 633 / 0.0 MOS4-associated complex subunit 5A, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Lus10012448 [exp] 322 / 1e-108 AT1G07360 250 / 1e-81 MOS4-associated complex subunit 5A, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Lus10021754 [exp] 62 / 6e-10 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10012071 [exp] 59 / 4e-09 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10014029 [exp] 58 / 6e-09 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10027911 [exp] 58 / 7e-09 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10012070 [exp] 58 / 8e-09 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10019889 [exp] 55 / 8e-08 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0537 [poplar] [flax] CCCH_zf PF16131 [poplar] [flax] Torus Torus domain
Representative CDS sequence Show only first row Show all	>Potri.009G041600.2 pacid=42770722 polypeptide=Potri.009G041600.2.p locus=Potri.009G041600 ID=Potri.009G041600.2.v4.1 annot-version=v4.1 ATGGCGCACAGGTTGTTAAAAGACCCGGAGGCTGACGGATGGGAACGGTCTGACTTTCCTATCATTTGCGAGTCTTGCTTAGGTGACAATCCCTATGTCA GAATGACCAGAGCTGACTTCGATAAGGAATGCAAGATATGTACTCGACCATTTACAGTGTTTAGGTGGAGGCCTGGCAGGGATGCGAGATTTAAAAAGAC TGAAGTTTGCCAGACTTGCAGTAAGTTGAAAAATGTTTGTCAAGTCTGTCTTTTGGATCTAGAGTATGGTTTGCCTGTTCAAGTTCGTGATACTGCTCTC AGTATAAATTCCAACGATGCTATTCCAAAGAGTGATGTGAATAGAGAGTATTTTGCCGAGGAGCATGACCGAAGGGCTAGGGCGGGAATTGATTATGAAT CTTCATATGGAAAGGCACAAGCAAATGATACTATTCTGAAGCTTCAAAGAACAACACCATACTACAAAAGAAATCGAGCACATGTTTGTAGCTTCTTTGC ACGTGGTGAATGCACACGAGGTGCCGAGTGCCCCTATAGGCATGAGATGCCCATAACTGGGGAGTTGTCACAACAAAATATTAAAGATCGTTACTATGGA GTGAATGATCCTGTGGCAATGAAGCTACTCAACAAGGCTGGAGACATGCCGTCATTAGAACCACCAGAGGATGAAAGCATTAAAACGCTCTATGTAGGTG GGCTTGATGCGAGGATCAATGAGCAGGACCTAAGGGATCAGTTTTATGCTCATGGCGAAATTGAATCCATAAAAATGGTGCCTCAAAGAGCAATTGCTTT TGTAACCTACACAACCAGAGAAGGAGCAGAAAAGGCCGCAGCGGAGCTCTCTAACAGGCTAGTCATCAAGGGTCTGCGTCTGAAATTGATGTGGGGTAGA CCGCAAGCACCAAAACCTGAGTCGGAAAGTTCTGATGAAGCAAGGCAGCAGGCAGCAATGGCCCATAGTGGGATGTTGCCCCGTGCAGTTGTATCTCAGC AACACAACCACTTAAATCCACCAGGCACCCAGGACCAACATCCTCCAATGCACTACTTCAATATTCCCCCACCACCTCAGCAAGAACGAGCATTTTACCC GTCAATGGATCCTCAAAGAATGGGTGCCCTTGTTGGATCCCAAGACGGTACTCCTAATGGGCCTGCAGGATCAGGTGAGAATAAATCTGGATTGGAGAAG CAGCTCGGGCAGCACTATCCATATCAAAGTATGCCACCACCTCACGTGCAATACCAACAACAATACCAACAACAACATTATCCAGCATATGGTTATATGC CGCCAGTGCCACCGTATCAGCAGTATCCTCTGCCATATCACACTCCTGTGCCTCCCCCACAGGTGGTGCAATCCACACAGCAGTATCAGCATCGTGTGCC ACCGCCAATGTCTGCACCTGCAGAGTCCATGACCTCATTGCCCCCACCTCAGGGATCCCGAGCACCTGCAGGGTCCATGCCCTCTGGACCCCCACCTCAG GGATCTGAAGCACCTGCTGGGTCTAAACCCTCCGGCCCACCATCTCCTAGACCTGGAGAACCTGAAGAATCTAAACCCTCAGGGCCCCCACCTTAA
AA sequence Show only first row Show all	>Potri.009G041600.2 pacid=42770722 polypeptide=Potri.009G041600.2.p locus=Potri.009G041600 ID=Potri.009G041600.2.v4.1 annot-version=v4.1 MAHRLLKDPEADGWERSDFPIICESCLGDNPYVRMTRADFDKECKICTRPFTVFRWRPGRDARFKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTAL SINSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKAQANDTILKLQRTTPYYKRNRAHVCSFFARGECTRGAECPYRHEMPITGELSQQNIKDRYYG VNDPVAMKLLNKAGDMPSLEPPEDESIKTLYVGGLDARINEQDLRDQFYAHGEIESIKMVPQRAIAFVTYTTREGAEKAAAELSNRLVIKGLRLKLMWGR PQAPKPESESSDEARQQAAMAHSGMLPRAVVSQQHNHLNPPGTQDQHPPMHYFNIPPPPQQERAFYPSMDPQRMGALVGSQDGTPNGPAGSGENKSGLEK QLGQHYPYQSMPPPHVQYQQQYQQQHYPAYGYMPPVPPYQQYPLPYHTPVPPPQVVQSTQQYQHRVPPPMSAPAESMTSLPPPQGSRAPAGSMPSGPPPQ GSEAPAGSKPSGPPSPRPGEPEESKPSGPPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Potri.009G041600 [exp]	0	1
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.004G204300 [exp]	1.00	0.9595	IDH1.1
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Potri.009G041400 [exp]	1.41	0.9398
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.001G220600 [exp]	1.73	0.9359
					Potri.005G009001 [exp]	4.47	0.9332
AT4G10790			UBX domain-containing protein ...		Potri.001G085600 [exp]	4.47	0.9307
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.010G131400 [exp]	4.69	0.9196
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Potri.002G044000 [exp]	5.00	0.8988
AT1G10580			Transducin/WD40 repeat-like su...		Potri.008G172800 [exp]	5.47	0.9207
AT4G27540		PRA1.H	prenylated RAB acceptor 1.H (....		Potri.001G396900 [exp]	5.83	0.8911
AT1G09710	MYB		Homeodomain-like superfamily p...		Potri.002G106500 [exp]	5.91	0.9254

Compare expression of checked genes

Potri.009G041600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.