Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35785 139 / 4e-39 RNA-binding (RRM/RBD/RNP motifs) family protein AT1G07350 142 / 1e-38 SR45a serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52380 70 / 5e-13 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT5G04280 66 / 8e-12 AtRZ-1c AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT5G54580 62 / 1e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 64 / 4e-11 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G06210 61 / 4e-11 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT4G13860 58 / 7e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52150 61 / 1e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G73530 59 / 3e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G248100 [exp] 204 / 1e-62 AT1G07350 125 / 2e-35 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.003G130301 [exp] 164 / 6e-49 AT4G35785 145 / 3e-43 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.005G105700 [exp] 138 / 1e-38 AT4G35785 158 / 4e-48 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G101500 [exp] 100 / 3e-25 AT4G35785 97 / 1e-25 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G409800 [exp] 68 / 9e-14 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G130300 [exp] 68 / 2e-13 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 66 / 1e-12 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G086500 [exp] 67 / 4e-12 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.016G090700 [exp] 65 / 9e-12 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018202 [exp] 179 / 2e-51 AT1G07350 145 / 1e-41 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10040705 [exp] 176 / 2e-51 AT1G07350 163 / 2e-46 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10041854 [exp] 141 / 1e-39 AT4G35785 179 / 6e-56 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10028400 [exp] 139 / 3e-39 AT4G35785 181 / 2e-57 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10028776 [exp] 130 / 6e-36 AT4G35785 127 / 5e-36 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10017507 [exp] 115 / 2e-30 AT4G35785 123 / 4e-35 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10040854 [exp] 63 / 2e-12 AT3G46020 112 / 1e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10005891 [exp] 66 / 5e-12 AT3G45980 230 / 1e-76 HISTONE H2B, Histone superfamily protein (.1) Lus10003593 [exp] 65 / 2e-11 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014802 [exp] 65 / 2e-11 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.009G041700.1 pacid=42772554 polypeptide=Potri.009G041700.1.p locus=Potri.009G041700 ID=Potri.009G041700.1.v4.1 annot-version=v4.1 ATGTCGTACACCAGAAGGTCAAGGTATTCCCTTTCGCCTTCCCCATACAGGCGAGACAGCAGGCCTGACTCCAGATCATTGTCGAGGTCGAGCTCCAGGT CAAGGTCAAGGTCCAGGTCCAGGAGCTACTCAAGGGATGTGGAGAATCCTGGTAACAATTTGTATGTGACAGGGTTGTCACCTCGGATTACCAAGAAGGA ACTCGAGAAGCATTTTTCCGCCGAAGGAACGGTAATTGATGTTCATCTTGTCGTTGACCCATGGACAAGAGAATCTCGTGGGTTTGGGTTTGTTACTATG TCTACTGTTGAGGAGGCTGATCATTGTATCAAGTATTTGGACCGATCGGTTCTTGAGGGTCGTGTCATTACAGTGGAGAAGGCTAAGCGGAAGAGAGGAC GGACTCCTACTCCTGGAAGGTATTTGGGGCTGAGAACAATTCGTGTGCATCGCTGGACTCCTAGTAATTCTCCTTATCGATCTCCTAGCCACTCTCCTTT GCGGAGGAGCAGGAGTCGGTCGCCACGTTATTCATCTGAACGTAACAGAAATAGATCCTACTCCCCATGTTACCACCGACACAGATCATATTCTCCTTAC TACTATAACCATCATCGATACCTCTCTCGATCTCGATCTCCATATAGTACGTCCCCTGTCAGCAGGCATGACCGGTCGTACTCACCTTACTACTCAAGGC ATTACTCACCAGATGACAGATACTATAGAAGACACCACTATTGCTCTGTATCTCGCAGTCCTACTCCATGTAGGGCTCGGAGGAGTTATTCACGAAGCAT CTCCCCTAGCCCATGGAGGAGGACCTCAAGGAGAAGCTATTCACGCAGTATATCCCCTGCACCAAGGAGGAGTTATCCACGAAGCATCTCCCCTAGCCCA AGGAGGAGCTCAAGGAGAAGCAGCTATTCACGCAGTGAATTCCCTGCACCAAGGAGGAGCTCGAGGAGGAGTTATTCTAGAAGCGTTACACCAAGGCTAA GGAATAGCTTGAGGAGGAGGGGGCGCTCTCGAGACAGCAGCAGTGCAAGCCCTACTTCCAGATGTGCCTCTAGCTCTGTCACCCCTAGCTCGGAGCTAGC TTCTCCATCTCACTGA
AA sequence Show only first row Show all	>Potri.009G041700.1 pacid=42772554 polypeptide=Potri.009G041700.1.p locus=Potri.009G041700 ID=Potri.009G041700.1.v4.1 annot-version=v4.1 MSYTRRSRYSLSPSPYRRDSRPDSRSLSRSSSRSRSRSRSRSYSRDVENPGNNLYVTGLSPRITKKELEKHFSAEGTVIDVHLVVDPWTRESRGFGFVTM STVEEADHCIKYLDRSVLEGRVITVEKAKRKRGRTPTPGRYLGLRTIRVHRWTPSNSPYRSPSHSPLRRSRSRSPRYSSERNRNRSYSPCYHRHRSYSPY YYNHHRYLSRSRSPYSTSPVSRHDRSYSPYYSRHYSPDDRYYRRHHYCSVSRSPTPCRARRSYSRSISPSPWRRTSRRSYSRSISPAPRRSYPRSISPSP RRSSRRSSYSRSEFPAPRRSSRRSYSRSVTPRLRNSLRRRGRSRDSSSASPTSRCASSSVTPSSELASPSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.009G041700 [exp]	0	1
AT4G26680			Tetratricopeptide repeat (TPR)...		Potri.014G166001 [exp]	1.00	0.7748
AT5G11070			unknown protein		Potri.003G048200 [exp]	9.48	0.6708
AT4G37480			Chaperone DnaJ-domain superfam...		Potri.007G052400 [exp]	18.76	0.6419
					Potri.001G015450 [exp]	33.46	0.6137
AT5G20220			zinc knuckle (CCHC-type) famil...		Potri.010G092600 [exp]	36.27	0.6645
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Potri.001G112700 [exp]	45.60	0.5587
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.010G226901 [exp]	59.63	0.6348
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Potri.019G054000 [exp]	67.52	0.6096
AT4G19150			Ankyrin repeat family protein ...		Potri.003G103400 [exp]	81.42	0.6115
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Potri.015G055500 [exp]	85.18	0.5671

Compare expression of checked genes

Potri.009G041700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.