Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46970 1445 / 0 ATPHS2, PHS2 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) AT3G29320 1079 / 0 PHS1 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G048600 [exp] 805 / 0 AT3G46970 842 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Potri.010G160200 [exp] 586 / 0 AT3G29320 1397 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.004G123600 [exp] 572 / 0 AT3G29320 727 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.008G093901 [exp] 96 / 3e-23 AT3G29320 131 / 8e-37 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001200 [exp] 1396 / 0 AT3G46970 1377 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Lus10042688 [exp] 1039 / 0 AT3G29320 1422 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10036892 [exp] 851 / 0 AT3G29320 1108 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10029643 [exp] 598 / 0 AT3G29320 863 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10037093 [exp] 582 / 0 AT3G29320 1378 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10029644 [exp] 432 / 3e-146 AT3G29320 538 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10007546 [exp] 61 / 1e-09 ND 63 / 1e-10
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00343 [poplar] [flax] Phosphorylase Carbohydrate phosphorylase
Representative CDS sequence Show only first row Show all	>Potri.009G041800.1 pacid=42770830 polypeptide=Potri.009G041800.1.p locus=Potri.009G041800 ID=Potri.009G041800.1.v4.1 annot-version=v4.1 ATGGCTCCTGCTAGTGTTAAGCCCAATAGTGCTGGCGCTGCTACTAGTACAGCAACAGTGTCCGCGGTTTCTTCTTCTAAAGTACCTCCAATCGCACGCC CATTAGCTGGTGAACCAGAAGAGGTAGCATCAAATATAAATTACCATGCACAATTCAGTCCTCATTTCTCTCCTTTCAAGTTCGAACCTGAACAAGCCTA CTTTGCCACTGCTGAAAGCGTCCGCGATCGCCTCATTCAACAATGGAATGAGACTTATGTTCATTATCACAAAGAGGATCCAAAGCAGACTTACTATTTG TCAATGGAATATCTTCAAGGACGAGCTTTGACTAATGCAATTGGGAATCTTGACATTCAAGATGCTTATGGTGAGGCTTTGAATCAGTTAGGGCATCAGC TTGAGGACATTGTTGAGCAGGAGAAAGATGCTGCACTTGGAAATGGGGGTCTAGGAAGACTTGCTTCATGTTTTTTAGACTCGATGGCAACGTTGAATTT GCCAGCATGGGGATATGGTCTGAGGTACAGATATGGGCTGTTCAAGCAGCGGATCACCAAAGAGGGCCAAGAAGAAATTGCTGAGGACTGGCTGGAGAAG TTCAGTCCTTGGGAAATTGTCAGGCATGATGTTGTATTTCCTGTCAGGTTTTTTGGTCACGTGGAGGTTAATCCTGATGGATCCCGAAAATGGGTTGGTG GTGACATTGTGCAAGCTCTAGCCTATGATGTGCCAATTCCAGGATACAAAACCAAGAACACCATTAGTCTTCGTCTCTGGGAAGCAAGAGCTTCTTCTGA CGACTTCAATCTATTTCTATTTAATGATGGACAGTATGAATCCGCTTCACAGCTTCATTCTCGAGCTCAGCAGATTTGTGCTGTTCTTTATCCTGGGGAT GCTACAGAAAATGGAAAACTTTTGCGGCTGAAGCAACAATTCTTTCTGTGCAGTGCTTCACTTCAGGATATTATTCTTAGATTTAAGGAGAGAAAAAATG AGAACGGATCATGGAACTGGTCTGAATTTTCTAGCAAGGTCGCTGTACAACTGAATGATACTCATCCTACTCTTGCAATTCCAGAGCTGATGCGATTGTT GTTGGATAATGAAGGACTTGGATGGGATGAAGCTTGGGATGTCACAACTAGGACAGTTGCTTATACCAATCATACAGTCCTTCCTGAAGCACTGGAAAAA TGGTCACAGTCTGTAATGTGGAAGCTTCTCCCGCGGCATATGGAAATCATAGAAGAGATAGACAAGAGGTTCATCACAATGATACGCACCACTCGACCTG ATCTTGAGAGCAAGCTTCCTAGTATGTGCATCTTGGATAATAATCCTCAGAAACCAGTTGTGCGGATGGCAAATCTATGTGTGGTATCTTCACATAAGGT GAATGGTGTAGCTCAGTTACACAGTGATATACTAAAGGCTGAGCTATTTGCAGACTATGTCTCTATATGGCCAAAAAAGTTCCAAAATAAAACCAATGGA ATCACTCCTCGCCGGTGGCTTCGCTTTTGCAGTCCTGAGCTCAGTAATATAATTACAAAATGGTTGAAAACTGACCAGTGGGTTACCAACCTTGACCTAC TTGTAGGTCTTCGAGAGTTTGCTGAAAATGCAGACTTACAAGCTGAATGGTCATCTGCCAAGATGGCTAATAAGCAGCGTTTAGCACAGTACATATTGCG AGAAACAGGTGTGAGCATTGATCCAAATAGTCTTTTTGACATACAAGTCAAGCGCATCCATGAATATAAGAGACAGTTGATGAATATTTTGGGTGCAATA TATAGGTACAAGAAACTAAAGGAGATGAGCACTGAAGAGCGGAAGAAAACAACTCCACGTACCATTATGTTTGGAGGAAAAGCATTTGCAACATATACAA ATGCTAAAAGAATTGTAAAGCTGGTAAATGATGTTGGCACTGTTGTCAATACCGATCCTGAAGTCAATAGTTATTTAAAGGTAGTATTTGTTCCAAATTA CAATGTATCTGTGGCAGAGATGCTTATTCCTGGAAGTGAGTTGTCACAGCATATCAGCACAGCAGGCATGGAAGCAAGTGGCACCAGCAACATGAAGTTT GCACTCAATGGTTGCCTTATAATAGGAACCTTGGATGGCGCTAATGTTGAAATCAGGGAAGAAATAGGAGAGGAGAATTTCTTTCTCTTCGGTGCAACAG CAGATGAAGTCCCCAGACTGCGCAAGGAAAGAGAGAATGGATTGTTTAAACCAGATCCTCGGTTTGAAGAGGCCAAGATGTATATAAGAAGCGGAGCATT TGGAAGCTATGACTACAACCCACTTCTTGAGTCTCTAGAAGGGAACTCCGGTTATGGACGTGGAGATTATTTTCTTGTTGGCCATGATTTCCCAAGCTAC ATGGATGCACAGGAAAGAGTAGATGAAGCTTACAAGGATCGTAAGAGGTGGTTGAGGATGTCTATACTTAGCACCGCTGGCAGTGGCAAATTCAGCAGTG ATCGGACAATTTCCCAATACGCCAAGGAAATCTGGAACATAGAGGAGTGCCGGGTACCATAA
AA sequence Show only first row Show all	>Potri.009G041800.1 pacid=42770830 polypeptide=Potri.009G041800.1.p locus=Potri.009G041800 ID=Potri.009G041800.1.v4.1 annot-version=v4.1 MAPASVKPNSAGAATSTATVSAVSSSKVPPIARPLAGEPEEVASNINYHAQFSPHFSPFKFEPEQAYFATAESVRDRLIQQWNETYVHYHKEDPKQTYYL SMEYLQGRALTNAIGNLDIQDAYGEALNQLGHQLEDIVEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQRITKEGQEEIAEDWLEK FSPWEIVRHDVVFPVRFFGHVEVNPDGSRKWVGGDIVQALAYDVPIPGYKTKNTISLRLWEARASSDDFNLFLFNDGQYESASQLHSRAQQICAVLYPGD ATENGKLLRLKQQFFLCSASLQDIILRFKERKNENGSWNWSEFSSKVAVQLNDTHPTLAIPELMRLLLDNEGLGWDEAWDVTTRTVAYTNHTVLPEALEK WSQSVMWKLLPRHMEIIEEIDKRFITMIRTTRPDLESKLPSMCILDNNPQKPVVRMANLCVVSSHKVNGVAQLHSDILKAELFADYVSIWPKKFQNKTNG ITPRRWLRFCSPELSNIITKWLKTDQWVTNLDLLVGLREFAENADLQAEWSSAKMANKQRLAQYILRETGVSIDPNSLFDIQVKRIHEYKRQLMNILGAI YRYKKLKEMSTEERKKTTPRTIMFGGKAFATYTNAKRIVKLVNDVGTVVNTDPEVNSYLKVVFVPNYNVSVAEMLIPGSELSQHISTAGMEASGTSNMKF ALNGCLIIGTLDGANVEIREEIGEENFFLFGATADEVPRLRKERENGLFKPDPRFEEAKMYIRSGAFGSYDYNPLLESLEGNSGYGRGDYFLVGHDFPSY MDAQERVDEAYKDRKRWLRMSILSTAGSGKFSSDRTISQYAKEIWNIEECRVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.009G041800 [exp]	0	1
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Potri.002G113600 [exp]	1.41	0.9717
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.015G093600 [exp]	1.41	0.9528
AT2G40840		DPE2	disproportionating enzyme 2 (....		Potri.016G028900 [exp]	3.74	0.9264
AT4G14605			Mitochondrial transcription te...		Potri.017G067600 [exp]	4.58	0.9412
AT1G01320			Tetratricopeptide repeat (TPR)...		Potri.002G170900 [exp]	5.47	0.9474
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094200 [exp]	5.65	0.9469
AT1G29350			Kinase-related protein of unkn...		Potri.002G059300 [exp]	6.92	0.9432
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Potri.010G044100 [exp]	7.48	0.8950
AT4G09660			unknown protein		Potri.014G176225 [exp]	8.00	0.9406
AT2G40840		DPE2	disproportionating enzyme 2 (....		Potri.006G031700 [exp]	8.94	0.9447

Compare expression of checked genes

Potri.009G041800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.