Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58940 412 / 3e-141 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) AT4G00330 398 / 2e-136 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT2G11520 311 / 4e-101 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) AT1G79620 231 / 4e-67 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 228 / 3e-66 Leucine-rich repeat protein kinase family protein (.1) AT3G59420 225 / 2e-65 ACR4 crinkly4 (.1) AT1G67720 225 / 4e-65 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 225 / 5e-65 Leucine-rich repeat protein kinase family protein (.1) AT2G37050 225 / 5e-65 Leucine-rich repeat protein kinase family protein (.1.2.3) AT5G49770 221 / 1e-63 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087200 [exp] 424 / 4e-146 AT4G00330 488 / 7e-172 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.002G161600 [exp] 419 / 5e-144 AT4G00330 479 / 2e-168 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.018G124600 [exp] 326 / 9e-107 AT2G11520 502 / 6e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.006G064200 [exp] 325 / 3e-106 AT2G11520 508 / 2e-177 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.016G144100 [exp] 245 / 4e-72 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 242 / 4e-71 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G213200 [exp] 233 / 1e-68 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.001G204000 [exp] 221 / 6e-68 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.004G232500 [exp] 232 / 1e-67 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040704 [exp] 507 / 2e-178 AT5G58940 418 / 3e-143 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Lus10018203 [exp] 503 / 6e-170 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10018828 [exp] 399 / 2e-136 AT4G00330 471 / 2e-165 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10017787 [exp] 397 / 2e-134 AT4G00330 471 / 1e-163 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10036376 [exp] 393 / 3e-134 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10014760 [exp] 386 / 1e-123 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10028613 [exp] 335 / 5e-110 AT2G11520 540 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10041796 [exp] 328 / 1e-109 AT2G11520 498 / 2e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10018913 [exp] 317 / 2e-102 AT2G11520 520 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028347 [exp] 274 / 4e-87 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.009G041900.1 pacid=42771044 polypeptide=Potri.009G041900.1.p locus=Potri.009G041900 ID=Potri.009G041900.1.v4.1 annot-version=v4.1 ATGAAGAAAGCGTCTTCTCCCCATCCCCCTTACACGAACCCAACAAAACAGGTCTCTAATCTCCAATATGAACTAAGCAAGCGCCCTAGCAAAAATCGTT CTGTCTTGAGCTATGTCAAAACTGCATTCAAAAGAGTGGTTGGAGCCTTTACAATTTTGCTTCCCAGGAAAAGCAAGGCCGACGACATTGTAAATGATGC AGGCAAAAGCAACAAGCAAGTCGGAGGGATATCCTTTTCAACTGATCTTTCAACAGGAAGTAAGAGTTCATCGGTATTCAAGTCCTCTAGTACCCATGGA TCTTCCAGTGCCACAAGTGGAATGGTTGGGGAAGGTGGTTTCTCCATTCAAGAGATTTTTAAGATGACCGATAATTTCTCGCCTGCAAATAAGATTGGAG ACGGTAGCTTTTCTACCGTATACAAGGGGAGGCTCAGGGATGGATCTTTTGTTGCAGTGAAGCGTGCTCAAAAGAACACATATGACAAGCGTTTGTTACT GGAGTTCCAGAATGAAGCAATTACCCTGTCCAAGATTGAACATCTGAATTTGGTGAGATTTTATGGATACGTGGAGCAAGGAGATGAGCGAATCCTTGTG GTTGAATATGTTGGCAATGGAAATCTTCGAGAACATCTGGATGGTAAGAAAGGAAGTATACTTGAAATTGCTGAACGGCTAGATATTGCGATTGATGTGG CTCATGCAGTCACTTATCTTCACACGTATACAGATCCTCCAATAATCCACAGAGACATAAAAGCATCGAATGTTCTCATCACAGAGAAACTCCGAGCCAA AGTGGCAGACTTTGGGTTTGCGAGATTGACCACAGAAGGTTCTGATGCTACTCACATTTCTACTCAAGTCAAAGGAACAACAGGCTACTTGGATCCTGAA TACTTGAGGACATATCAACTCACTGAAAAGAGTGATGTCTACTCTTTCGGTGTGCTTCTTGTTGAACTGATGACAGGAAGACACCCGATTGAACAAAAGA GATCGTTAAAAGAGAGAGTCACCATAAAATGGGCAATGCAGAGTTTGAAAGGAGGAGATGCCATTTTTGTCATGGATCCATTACTAAGGAGGAGTCCTGG ATCAACCATGGCAATGGAGAAGGTGCTTAAATTAGCACGCCACTGCCTAGCACCTTCAAAACAATCAAGGCCTTCCATGAAGGACTGCAGTGAAGTGCTA TGGGGAATTCGAAAAGACTTGAGAGCAAGTGGTCCATCTTCTTCTGCTTTCATTTCTCACCAATCTGCAGACTTTCCTCGGAGAAATGAAAAAAAGAGTC GAGAAGCAGCATTTGGTATTGAAGATGGTGGGGGCTATAAATTCATTTCTGCATGA
AA sequence Show only first row Show all	>Potri.009G041900.1 pacid=42771044 polypeptide=Potri.009G041900.1.p locus=Potri.009G041900 ID=Potri.009G041900.1.v4.1 annot-version=v4.1 MKKASSPHPPYTNPTKQVSNLQYELSKRPSKNRSVLSYVKTAFKRVVGAFTILLPRKSKADDIVNDAGKSNKQVGGISFSTDLSTGSKSSSVFKSSSTHG SSSATSGMVGEGGFSIQEIFKMTDNFSPANKIGDGSFSTVYKGRLRDGSFVAVKRAQKNTYDKRLLLEFQNEAITLSKIEHLNLVRFYGYVEQGDERILV VEYVGNGNLREHLDGKKGSILEIAERLDIAIDVAHAVTYLHTYTDPPIIHRDIKASNVLITEKLRAKVADFGFARLTTEGSDATHISTQVKGTTGYLDPE YLRTYQLTEKSDVYSFGVLLVELMTGRHPIEQKRSLKERVTIKWAMQSLKGGDAIFVMDPLLRRSPGSTMAMEKVLKLARHCLAPSKQSRPSMKDCSEVL WGIRKDLRASGPSSSAFISHQSADFPRRNEKKSREAAFGIEDGGGYKFISA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58940		CRCK1	calmodulin-binding receptor-li...		Potri.009G041900 [exp]	0	1
AT1G70250			receptor serine/threonine kina...		Potri.004G014250 [exp]	3.31	0.8683
AT5G36930			Disease resistance protein (TI...		Potri.011G012475 [exp]	9.48	0.8467
AT2G05710		ACO3	aconitase 3 (.1)		Potri.014G153400 [exp]	15.39	0.7446
AT5G36930			Disease resistance protein (TI...		Potri.006G283500 [exp]	16.70	0.8155
AT5G36930			Disease resistance protein (TI...		Potri.011G014101 [exp]	16.88	0.7997
AT5G36930			Disease resistance protein (TI...		Potri.011G013900 [exp]	18.70	0.8104
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G049000 [exp]	18.86	0.7099
AT5G42900		COR27	cold regulated gene 27 (.1.2.3...		Potri.014G029000 [exp]	19.74	0.7868
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014450 [exp]	20.61	0.7876
AT2G03070		MED8	mediator subunit 8 (.1)		Potri.010G253100 [exp]	20.85	0.7413

Compare expression of checked genes

Potri.009G041900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.