Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29590 177 / 6e-58 Thioesterase superfamily protein (.1) AT1G04290 78 / 1e-18 Thioesterase superfamily protein (.1) AT3G16175 65 / 1e-13 Thioesterase superfamily protein (.1) AT1G52191 49 / 1e-07 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G134132 [exp] 87 / 3e-22 AT1G04290 166 / 2e-53 Thioesterase superfamily protein (.1) Potri.004G134066 [exp] 86 / 1e-21 AT1G04290 200 / 8e-67 Thioesterase superfamily protein (.1) Potri.003G051900 [exp] 69 / 2e-15 AT3G16175 125 / 2e-37 Thioesterase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018205 [exp] 208 / 8e-70 AT2G29590 206 / 6e-69 Thioesterase superfamily protein (.1) Lus10040701 [exp] 201 / 4e-67 AT2G29590 200 / 7e-67 Thioesterase superfamily protein (.1) Lus10004288 [exp] 92 / 6e-24 AT1G04290 226 / 5e-77 Thioesterase superfamily protein (.1) Lus10019228 [exp] 92 / 6e-24 AT1G04290 228 / 1e-77 Thioesterase superfamily protein (.1) Lus10006837 [exp] 71 / 1e-15 AT3G16175 114 / 5e-33 Thioesterase superfamily protein (.1) Lus10037583 [exp] 63 / 6e-13 AT3G16175 107 / 4e-30 Thioesterase superfamily protein (.1) Lus10006834 [exp] 61 / 3e-12 AT3G16175 102 / 4e-28 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [poplar] [flax] HotDog PF03061 [poplar] [flax] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Potri.009G042100.2 pacid=42771727 polypeptide=Potri.009G042100.2.p locus=Potri.009G042100 ID=Potri.009G042100.2.v4.1 annot-version=v4.1 ATGGAGAAGGCCAGGGAGTTTTTGAATCTGAGCAATGAAGAATCAGAGAGCGTGTCCTCAATCAAGTTTCACCCTCACAGACCATGGACTGAACGCAGTT TCTATGAAGATTTTTCTATTAGAGGAATCCAAGCTGACCGGATTGAACCCGGGTTCATCTCTACCACTTTCAAGGTCCCTCCTCGCCTCACTGATAGAAA TGGGAAGTTAGCAACCGGGGCAATTGCAAACCTCGTTGACGAAGGAGGTGCTTTAGTTGCCCAAGCTGAGGGTATCCCTTTTCTTGTCTCCGTGGATATG TCCATCTCTTTTCTCTCCACTGCAAACGTTAATGATGAATTAGAGATTACTGCGAGGGTTTTAGGACGAAATGGAGGCTATGCTGGAACAATTGTTCTTG TGAAAAACAAAGCAACAGGGGAGTTAATTGCTGAAGGTCGACACTCCCTGTTTGGCAAACATAATAGCAAAATGTGA
AA sequence Show only first row Show all	>Potri.009G042100.2 pacid=42771727 polypeptide=Potri.009G042100.2.p locus=Potri.009G042100 ID=Potri.009G042100.2.v4.1 annot-version=v4.1 MEKAREFLNLSNEESESVSSIKFHPHRPWTERSFYEDFSIRGIQADRIEPGFISTTFKVPPRLTDRNGKLATGAIANLVDEGGALVAQAEGIPFLVSVDM SISFLSTANVNDELEITARVLGRNGGYAGTIVLVKNKATGELIAEGRHSLFGKHNSKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29590			Thioesterase superfamily prote...		Potri.009G042100 [exp]	0	1
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Potri.003G215201 [exp]	2.64	0.8068
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.010G234100 [exp]	5.65	0.8059	MANS.2
AT2G17760			Eukaryotic aspartyl protease f...		Potri.005G108700 [exp]	6.24	0.7932
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.002G023900 [exp]	6.92	0.7917
AT5G46080			Protein kinase superfamily pro...		Potri.004G049200 [exp]	7.41	0.7879
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.002G143800 [exp]	9.79	0.7696
AT2G41690	HSF	AT-HSFB3, HSFB3	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.006G049200 [exp]	12.36	0.6895	Pt-HSFB3.1
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G014400 [exp]	14.07	0.7326
					Potri.019G129200 [exp]	17.14	0.7285
AT1G78440		ATGA2OX1	Arabidopsis thaliana gibberell...		Potri.011G095600 [exp]	17.23	0.7212	GA2ox6,GA2.8

Compare expression of checked genes

Potri.009G042100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.