Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58930 268 / 5e-83 Protein of unknown function (DUF740) (.1) AT3G46990 247 / 1e-74 Protein of unknown function (DUF740) (.1) AT3G09070 181 / 2e-49 Protein of unknown function (DUF740) (.1) AT2G38070 165 / 7e-44 Protein of unknown function (DUF740) (.1) AT5G01170 129 / 1e-31 Protein of unknown function (DUF740) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G248400 [exp] 819 / 0 AT5G58930 287 / 4e-90 Protein of unknown function (DUF740) (.1) Potri.006G096600 [exp] 305 / 6e-95 AT3G09070 283 / 3e-85 Protein of unknown function (DUF740) (.1) Potri.016G111400 [exp] 298 / 3e-92 AT3G09070 291 / 2e-88 Protein of unknown function (DUF740) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018206 [exp] 387 / 8e-128 AT5G58930 234 / 6e-70 Protein of unknown function (DUF740) (.1) Lus10040700 [exp] 298 / 3e-94 AT5G58930 221 / 2e-65 Protein of unknown function (DUF740) (.1) Lus10035513 [exp] 194 / 2e-53 AT3G09070 465 / 8e-155 Protein of unknown function (DUF740) (.1) Lus10027785 [exp] 184 / 2e-50 AT3G09070 385 / 7e-125 Protein of unknown function (DUF740) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05340 [poplar] [flax] DUF740 Protein of unknown function (DUF740)
Representative CDS sequence Show only first row Show all	>Potri.009G042200.5 pacid=42772241 polypeptide=Potri.009G042200.5.p locus=Potri.009G042200 ID=Potri.009G042200.5.v4.1 annot-version=v4.1 ATGACTCAACCACCGCAACCTCACCTCCCAAAGCACCGCCACCCTTCCTGCCACCGCCACCCTTCCAAACCCATTACTGGATTCTGCGCCTCCTGTCTCC GAGAACGCCTCGCCGGCATCGACCCTGACACCCACCAAGAAACCCCCGTGACCCATCTCGCCGCCGAGCTCCGTCGTAGCAAATCCTACTCCAGCACCAC CACAAGAAACAACCCCAACAATAACAATGCCTCCACCACTGCCACCACCTCTGAGCCCCGCCGCAAATCATGCGACGTTGGGCCGTTTCGTAACACTCTC TCTGATCTCTTCCACGTCGATGATAAAAGAAGAAGCTCCTCGATTGAAAAGACAAAGGGTTTTGATTCAGGGCTTGAATTAAAAGAAGAGGAGAATTTAG GAGAGATTAGGGTTTCTGCGCAGGGTGCGAATAACAGTGAAGGGAATGTGGAGGATCTTGAAGAGGACGGAGAGTTAAAAACAATGAAAGAGTTTATAGA CCTTGAATGGGAGAGAAAGAAAACTGGAGGGAGAGATCTCAAGGACATTGCGGGGAGTTTTTGGGAGGTGGCTTCAGTGTTTAGTAAGAAATTAGGGAAA TGGCAGCGAAAACATAAAAGGAAGGAGAAGATAGATGGGGGAAATCTTGGTGGTTTGGTGAAAAATGAGAAGTTGAGTGTCAGGAAATTGAGAGAGACGC AATCAGAGATTGGAGAGTATGGATTTGGGAGGAGATCTTGTGACACTGATCCAAGATTATCTGTGGATGTGGCACGGTTGTCTGTTGATGATTCTCACTA TTCGTTCGATGAGCCTAGGGCTTCTTGGGATGGAAACTTAATTGGTAAAACTTATCCGAGGCTAACTCCATTGGTTTCGGTTATGGAGGATGTCAAGTTG CCTAGTGGTGGTGTTGAGAATGCAAAGGAGAATGATAGTCTGAAGAATGAAGGGGAAAGTAGTCCTGGAGGTACGATGCTAACTATGAATTATTATTCAG ATAGGAGGAGGAAGAGTTTTGATCGTTCCGGATCTAATAGGAGAGTGGGGCTAGGGGATGAAGAGTTTAAATCAATGTCGAATGCCAAGGTGTCTCCTGA AACAGTTGGGCTATTCCATGGGGCAAAGTTGTTGGTCACAGAGAAAGAATTGAGGGACTCAAATTGGTACTCGCTCAAAGATCACCGTGAGGAGAATGCG GATGCCGTTTCCAAAGATGTTAGTTCTATTACTGGTGGCGGGGTTAGGAAGAAGGGTTTCAAATTCAAGAAGTCGCATAAGTGGTATGGCGTGTGGAATA TTTGGGGTTTGATGCAGAGGAGTAGTCAGAGCAAATGTGGAGATGAGGAGAGTCGAGTTAGTGGAAATGCGGTTGATGGGCCAATACCAGAGTCTTGGCA GAATTTGAGTGGCGTGGCCGATGGAGAAGCAAACAGGATTGTGAACCCGAAGCTTATTCGGAGCTATACTGTGAGTGCAAGGGATTCCTGCCGGATGGCT TGCAGTACAAATGGTGCTGAGAGCAAAGCGAATGACATTAAGAGAGGGGAAGAGCTTTTGCTGCAGCGGAACCGGAGTACCAGGTATTCTCCAAACAACC TTGATAATGGCCTGCTACGGTTCTACCTGTCACCATTAAGGAGTTATGGAAGAAGCAAATCTGGAAAGAGTAGGCTAAAGAACACAAATTCCATGTCAAG GAATGTTTTGTAA
AA sequence Show only first row Show all	>Potri.009G042200.5 pacid=42772241 polypeptide=Potri.009G042200.5.p locus=Potri.009G042200 ID=Potri.009G042200.5.v4.1 annot-version=v4.1 MTQPPQPHLPKHRHPSCHRHPSKPITGFCASCLRERLAGIDPDTHQETPVTHLAAELRRSKSYSSTTTRNNPNNNNASTTATTSEPRRKSCDVGPFRNTL SDLFHVDDKRRSSSIEKTKGFDSGLELKEEENLGEIRVSAQGANNSEGNVEDLEEDGELKTMKEFIDLEWERKKTGGRDLKDIAGSFWEVASVFSKKLGK WQRKHKRKEKIDGGNLGGLVKNEKLSVRKLRETQSEIGEYGFGRRSCDTDPRLSVDVARLSVDDSHYSFDEPRASWDGNLIGKTYPRLTPLVSVMEDVKL PSGGVENAKENDSLKNEGESSPGGTMLTMNYYSDRRRKSFDRSGSNRRVGLGDEEFKSMSNAKVSPETVGLFHGAKLLVTEKELRDSNWYSLKDHREENA DAVSKDVSSITGGGVRKKGFKFKKSHKWYGVWNIWGLMQRSSQSKCGDEESRVSGNAVDGPIPESWQNLSGVADGEANRIVNPKLIRSYTVSARDSCRMA CSTNGAESKANDIKRGEELLLQRNRSTRYSPNNLDNGLLRFYLSPLRSYGRSKSGKSRLKNTNSMSRNVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58930			Protein of unknown function (D...		Potri.009G042200 [exp]	0	1
AT5G08630			DDT domain-containing protein ...		Potri.004G138900 [exp]	6.63	0.7564
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Potri.003G123800 [exp]	31.87	0.6461
AT1G29320			Transducin/WD40 repeat-like su...		Potri.012G095100 [exp]	39.49	0.7216
AT3G11460			Pentatricopeptide repeat (PPR)...		Potri.006G211400 [exp]	40.24	0.6821
AT1G43760			DNAse I-like superfamily prote...		Potri.014G188801 [exp]	44.35	0.7225
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Potri.008G198800 [exp]	46.09	0.6478
AT4G17565			F-box family protein with a do...		Potri.004G134900 [exp]	53.47	0.7183
AT1G43760			DNAse I-like superfamily prote...		Potri.014G189001 [exp]	54.22	0.7190
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Potri.002G243300 [exp]	60.59	0.6412
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.002G097700 [exp]	62.38	0.7078

Compare expression of checked genes

Potri.009G042200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.