Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54140 832 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 820 / 0 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 707 / 0 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 667 / 0 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 610 / 0 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT5G46050 474 / 8e-162 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT1G68570 466 / 1e-158 Major facilitator superfamily protein (.1) AT4G21680 464 / 5e-158 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT2G40460 461 / 7e-157 Major facilitator superfamily protein (.1) AT1G32450 461 / 2e-156 NRT1.5 nitrate transporter 1.5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G248600 [exp] 1078 / 0 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 890 / 0 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 862 / 0 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 846 / 0 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 719 / 0 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 662 / 0 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.002G029200 [exp] 527 / 0 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.005G233500 [exp] 523 / 2e-180 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.008G170100 [exp] 514 / 1e-177 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018207 [exp] 934 / 0 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10035516 [exp] 844 / 0 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 837 / 0 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10040698 [exp] 825 / 0 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10030947 [exp] 722 / 0 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 712 / 0 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 693 / 0 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 687 / 0 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040100 [exp] 654 / 0 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10024300 [exp] 526 / 0 AT3G54140 532 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.009G042400.2 pacid=42771347 polypeptide=Potri.009G042400.2.p locus=Potri.009G042400 ID=Potri.009G042400.2.v4.1 annot-version=v4.1 ATGGCAGAGGAGGATGTTTATACAAAAGATGGAACTGTGGATTATCTGGGGAATCCTGCTAACAGAAAGGAGACTGGAACCTGGAGGGCCTGCCCTTTTA TTATAGGAAATGAATTTTGTGAACGATTGGCGTACTATGGGATGAGCTCCAATCTGGTTCTTTATTTCAAGCACAGACTGAACCAGAGCAGTGCTACAGC TACTAGAAATAACTTGAACTGGGGTGGAACATGCTATCTCACTCCATTGATCGGAGCATTCGTTGCTGATGCTTATCTAGGAAGATATTGGACGATTGCT AGTTTCTCAACCATATATGTTGCAGGGATGACGCTTTTGACAATGTCAGCAACTGTCCATGGCCTCAGGCCAGAATGTTATTCAAAAGATCATTGCCATC CAACAGGTGGTCAAACTGCTGTAACTTTCGTAGCACTTTACCTGATAGCACTTGGCACAGGAGGTATTAAGCCTTGTGTCTCATCCTATGGAGCAGATCA GTTTGATGATGCTGACGAAACTGAGAAGAAACACAAGAGTTCATTCTTTAACTGGTTCTACCTCTCGATTAATGTTGGTGCTCTTATTGCCGGTTCTGTG CTGGTTTGGATACAAGATAATGTGAGTTGGGGATGGGGTTTTGGCATTCCAGCAATAGCCATGGCAATTGCTGTTGTGAGCTTCTTTTCAGGTACCAAGT TGTTCAGGTATCAAAAGCCTGGAGGCAGCCCTCTTACACGCATCTGTCAGGTGCTGGTGGCATCCTTCAGAAAACAGAAAGTTGAAGTTCCTGCTGACAA GTCTCTGTTGCATGAGACTGCAGATGCCGAATCCAACATCAAAGGAAGCCGCAAGCTCGACCATACTGAAGAATTTAGTTTCCTTGACAAGGCAGCAGTA GAAACAGAAAAGGACGACATAAAAGGGACAGGAGACCCATGGAATCTTTGCACAGTAACCCAGGTCGAGGAGCTAAAGGCTATCATTCGGTTGCTTCCTA TATGGGCCACTGGTATCATCTTTTCTGCAGTGTACAGCCAAATGGGGAACTTATTTGTGCTGCAAGGTGAAACAATGGATAAATTTGTTGGAAACTCCAC TTTCGAGATACCATCTGCATCTTTATCCATCTTTGACACCCTTAGTGTCATTTTTTGGGTCCCTGTGTATGACCGAATTATCGTCCCAGTTGCAAGAAAA TTCACTGGACATAAAAACGGCTTAACTCAACTGCAGCGGATGGGCATTGGTCTATTCATATCAATATTTGCCATGGTATCTGCAGCAATCTTGGAACTTA AAAGACTGCAAATGGTGAGAAATAACAACTACTACGAACTTGATTCCGTGCCCATTTCTATATTTTGGCAAGTTCCACAGTATTTCCTGATAGGCTGTGC CGAAGTTTTCACGTTCATCGGACAATTGGAATTCTTCTACGAACAAGCACCTGATGCAATGAGGAGCATGTGTTCTGCCCTGTCACTCACCACCGTCGCA CTTGGCAATTACTTAAGCTCTCTTCTGGTAACCATTGTTACAACCATCAGCACTAAGAATGGAAAGGCTGGATGGATTCCGGACAACTTAAATTACGGTC ACATTGATTACTTCTTCTGGCTACTAGGAATACTCAGTGTGCTGAATTTAGGTGCCTTTCTCTTGATCTCAAATTGGTACACTTATAAAAAGGCTGTAGG AACTCTGCGTTGA
AA sequence Show only first row Show all	>Potri.009G042400.2 pacid=42771347 polypeptide=Potri.009G042400.2.p locus=Potri.009G042400 ID=Potri.009G042400.2.v4.1 annot-version=v4.1 MAEEDVYTKDGTVDYLGNPANRKETGTWRACPFIIGNEFCERLAYYGMSSNLVLYFKHRLNQSSATATRNNLNWGGTCYLTPLIGAFVADAYLGRYWTIA SFSTIYVAGMTLLTMSATVHGLRPECYSKDHCHPTGGQTAVTFVALYLIALGTGGIKPCVSSYGADQFDDADETEKKHKSSFFNWFYLSINVGALIAGSV LVWIQDNVSWGWGFGIPAIAMAIAVVSFFSGTKLFRYQKPGGSPLTRICQVLVASFRKQKVEVPADKSLLHETADAESNIKGSRKLDHTEEFSFLDKAAV ETEKDDIKGTGDPWNLCTVTQVEELKAIIRLLPIWATGIIFSAVYSQMGNLFVLQGETMDKFVGNSTFEIPSASLSIFDTLSVIFWVPVYDRIIVPVARK FTGHKNGLTQLQRMGIGLFISIFAMVSAAILELKRLQMVRNNNYYELDSVPISIFWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSMCSALSLTTVA LGNYLSSLLVTIVTTISTKNGKAGWIPDNLNYGHIDYFFWLLGILSVLNLGAFLLISNWYTYKKAVGTLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.009G042400 [exp]	0	1
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.018G114100 [exp]	2.00	0.9294
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Potri.017G084300 [exp]	3.74	0.9046
AT4G14450		ATBET12	unknown protein		Potri.010G073900 [exp]	4.00	0.9196	Pt-ATBET12.2
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.009G011900 [exp]	4.47	0.9243
AT4G27810			unknown protein		Potri.015G011900 [exp]	5.09	0.9047
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Potri.014G079400 [exp]	6.00	0.9087	Pt-DGD2.1
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Potri.003G134900 [exp]	7.48	0.9090
AT3G43230			RING/FYVE/PHD-type zinc finger...		Potri.006G135800 [exp]	12.40	0.8479
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Potri.004G207200 [exp]	12.72	0.9146
AT2G19130			S-locus lectin protein kinase ...		Potri.013G121350 [exp]	13.11	0.8823

Compare expression of checked genes

Potri.009G042400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.