Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47000 934 / 0 Glycosyl hydrolase family protein (.1) AT3G47040 923 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47010 907 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47050 888 / 0 Glycosyl hydrolase family protein (.1.2) AT5G04885 729 / 0 Glycosyl hydrolase family protein (.1) AT5G20950 687 / 0 Glycosyl hydrolase family protein (.1.2) AT5G20940 675 / 0 Glycosyl hydrolase family protein (.1) AT3G62710 568 / 0 Glycosyl hydrolase family protein (.1) AT3G19620 156 / 4e-40 Glycosyl hydrolase family protein (.1) AT5G64570 147 / 3e-37 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G013500 [exp] 735 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.009G153900 [exp] 724 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 722 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 719 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013700 [exp] 717 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.005G059200 [exp] 290 / 4e-94 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 235 / 4e-74 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 214 / 8e-66 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 171 / 4e-49 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005871 [exp] 991 / 0 AT3G47000 908 / 0.0 Glycosyl hydrolase family protein (.1) Lus10001200 [exp] 987 / 0 AT3G46970 1377 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Lus10005706 [exp] 731 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10010657 [exp] 726 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10001151 [exp] 720 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013646 [exp] 715 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013390 [exp] 702 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10033393 [exp] 697 / 0 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1) Lus10008432 [exp] 696 / 0 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008434 [exp] 694 / 0 AT5G04885 796 / 0.0 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00933 [poplar] [flax] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [poplar] [flax] PF01915 [poplar] [flax] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G042800.1 pacid=42771784 polypeptide=Potri.009G042800.1.p locus=Potri.009G042800 ID=Potri.009G042800.1.v4.1 annot-version=v4.1 ATGGAAAGCAGCAGCTGCATTTACAAAGACCCCAATTCACCCATTGAAGCTCGTGTAAAGGACCTTCTTTCAAGAATGACTTTGAAAGAGAAGGTTGCCC AGATGACCCAAATCGAACGCTCTGTTGCCACTCCCCACTATCTTCAGGATCTTGGAATTGGGAGTGTAATGAACGCTGGAGGCAGCGCACCTTTTCCAAA TGCAAAGTCGTCTGACTGGGCGGATATGGTTGATTGGTTTCAAAAGTTAGCACTTCAGTCGCGGCTTGGTATACCCATTATATATGGGATTGATGCTGTT CATGGTAATAATGGTGTTTATGGTACCACCATATTTCCTCACAATGTTGGCCTTGGAGCCACCAGAGATGCAGATTTGGTGCGGAGGATAGGTGTTGCAA CAGCTCTTGAAGTTAGGGCTTGTGGCATTCAGTATACGTTTGCTCCGTGTGTGGCTGTATGCAGGGATCCCCGGTGGGGAAGATGCTATGAGAGCTACAG TGAAGACACTAACATAGTTAGAGAGATGGCCTCTATTGTTACAGGCTTGCAGGGACAGCCACCTGAAGGACACCCAAATGGCTACCCTTTCTTGGCAGGA AGAAACAATGTTATTGCCTGTGCTAAGCATTTTGTTGGAGATGGGGGTACTCACAAAGGTTTAAATGAGGGGGATACTATATTGTCTTATGAGGATCTAG AGAGGATTCACATGGCACCATATCTAGACTGTATTTCCCAGGGTGTTGGCACTATTATGGTTTCTTATTCTAGTTGGAATGGACGCCAACTGCATGCTCA CCATTTTCTCCTGACAGAAGTTTTGAAAGATAAGTTAGGTTTTAAGGGTTTTGTGATTTCTGACTGGGAAGCACTAGACCGACTCAGTAAACCTCTCGGA TCAAACTATCGTCGCTGTGTTTCCACTGCTGTTAATGCTGGAACTGACATGGTAATGGTGGGGCAAAAACATAGAGAATTTATGAAAGATCTGATTTTTC TGGCAGAATCAGGGGAGATCCCGATGACCAGGATTGATGATGCTGTTGAAAGAATACTGAGAGTGAAGTTTGTGGCTGGTCTTTTCGAATATCCCTTTGC TGATAGATCTTTACTAGATATAGTTGGTTGCAAGCTGCATAGAGAACTGGCACGTGAAGCAGTTCGCAAGTCCTTAGTTCTCTTAAAAAATGGGAAGGAT CCAAAGAAACCGCTTCTTCCACTAGATAGAAGTGCTAAGAAGATTCTTGTTGCTGGGACACATGCTGATAATCTTGGATATCAATGTGGAGGTTGGACCA TAGCCTGGAATGGGATGAGTGGCAGAATCACCATTGGGACAACTATCTTGGATGCCATTAAGGAAGCAATAGGAGAGGAAACCGAGGTGATTTATGAAAA AATTCCATCACCAGACACCTTAGCAAGCCAAGATTTTTCTTTTGCCATTGTAGCCGTTGGTGAAGATCCTTATGCAGAATTCACTGGTGACAATTCAGAG CTTGCAATCCCCTTTAATGGGGCTGATATAATAAGCTCAGTCGCTGATAAAATCCCCACATTGGTTATTCTGATATCTGGAAGACCTTTGGTTATAGAAC CATGGCTCTTGGAAAAGATAGATGGTCTCATTGCTGCTTGGTTGCCTGGAACTGAAGGAGAGGGAATTACAGATGTTATATTTGGAGATTATGATTTTAG TGGCCGACTGCCCGTGACATGGTTTAGAAAGGTTGAGCAATTGCCAATGAATTTAAGAGATAATTCAGAAGAACCTCTATTTCCATTAGGCTTTGGGTTA ACATGCGAAGCGGGCAATTCTTTTGACTGA
AA sequence Show only first row Show all	>Potri.009G042800.1 pacid=42771784 polypeptide=Potri.009G042800.1.p locus=Potri.009G042800 ID=Potri.009G042800.1.v4.1 annot-version=v4.1 MESSSCIYKDPNSPIEARVKDLLSRMTLKEKVAQMTQIERSVATPHYLQDLGIGSVMNAGGSAPFPNAKSSDWADMVDWFQKLALQSRLGIPIIYGIDAV HGNNGVYGTTIFPHNVGLGATRDADLVRRIGVATALEVRACGIQYTFAPCVAVCRDPRWGRCYESYSEDTNIVREMASIVTGLQGQPPEGHPNGYPFLAG RNNVIACAKHFVGDGGTHKGLNEGDTILSYEDLERIHMAPYLDCISQGVGTIMVSYSSWNGRQLHAHHFLLTEVLKDKLGFKGFVISDWEALDRLSKPLG SNYRRCVSTAVNAGTDMVMVGQKHREFMKDLIFLAESGEIPMTRIDDAVERILRVKFVAGLFEYPFADRSLLDIVGCKLHRELAREAVRKSLVLLKNGKD PKKPLLPLDRSAKKILVAGTHADNLGYQCGGWTIAWNGMSGRITIGTTILDAIKEAIGEETEVIYEKIPSPDTLASQDFSFAIVAVGEDPYAEFTGDNSE LAIPFNGADIISSVADKIPTLVILISGRPLVIEPWLLEKIDGLIAAWLPGTEGEGITDVIFGDYDFSGRLPVTWFRKVEQLPMNLRDNSEEPLFPLGFGL TCEAGNSFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47000			Glycosyl hydrolase family prot...		Potri.009G042800 [exp]	0	1
AT3G24590		PLSP1	plastidic type i signal peptid...		Potri.006G157900 [exp]	9.00	0.8851
					Potri.011G127400 [exp]	22.36	0.8836
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Potri.002G146200 [exp]	30.29	0.8904	PAG1.4
AT4G24750			Rhodanese/Cell cycle control p...		Potri.015G086100 [exp]	55.99	0.8598
AT1G72810			Pyridoxal-5'-phosphate-depende...		Potri.003G033200 [exp]	59.59	0.8797
AT1G53520			Chalcone-flavanone isomerase f...		Potri.011G101800 [exp]	59.69	0.8710
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124500 [exp]	63.48	0.8729
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Potri.014G096500 [exp]	76.83	0.8731
AT1G78010			tRNA modification GTPase, puta...		Potri.002G092600 [exp]	96.99	0.8610
AT1G22800			S-adenosyl-L-methionine-depend...		Potri.013G101700 [exp]	104.42	0.8361

Compare expression of checked genes

Potri.009G042800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.