Plant FIBer expression Database

Potri.009G042900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G26250 577 / 0 Major facilitator superfamily protein (.1)
AT3G05960 571 / 0 ATSTP6 sugar transporter 6 (.1)
AT1G07340 556 / 0 ATSTP2 sugar transporter 2 (.1)
AT5G26340 544 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1)
AT3G19940 514 / 3e-179 Major facilitator superfamily protein (.1)
AT1G50310 502 / 3e-174 ATSTP9 sugar transporter 9 (.1)
AT4G02050 498 / 6e-173 STP7 sugar transporter protein 7 (.1)
AT1G11260 477 / 1e-164 ATSTP1, STP1 sugar transporter 1 (.1)
AT4G21480 475 / 6e-164 STP12 sugar transporter protein 12 (.1)
AT3G19930 470 / 6e-162 ATSTP4, STP4 sugar transporter 4 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G248900
[exp]
726 / 0 AT5G26250 652 / 0.0 Major facilitator superfamily protein (.1)
Potri.008G150800
[exp]
585 / 0 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1)
Potri.008G150700
[exp]
585 / 0 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1)
Potri.010G090000
[exp]
578 / 0 AT5G26250 664 / 0.0 Major facilitator superfamily protein (.1)
Potri.008G151100
[exp]
538 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1)
Potri.010G089800
[exp]
535 / 0 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1)
Potri.018G113300
[exp]
499 / 2e-173 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1)
Potri.005G090700
[exp]
494 / 3e-171 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1)
Potri.006G189100
[exp]
491 / 4e-170 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005870
[exp]
711 / 0 AT5G26250 601 / 0.0 Major facilitator superfamily protein (.1)
Lus10002452
[exp]
558 / 0 AT5G26250 655 / 0.0 Major facilitator superfamily protein (.1)
Lus10010534
[exp]
543 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1)
Lus10002450
[exp]
540 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1)
Lus10021926
[exp]
535 / 0 AT5G26250 656 / 0.0 Major facilitator superfamily protein (.1)
Lus10021924
[exp]
518 / 3e-180 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1)
Lus10010532
[exp]
502 / 9e-175 AT5G26250 588 / 0.0 Major facilitator superfamily protein (.1)
Lus10013441
[exp]
479 / 2e-165 AT1G50310 731 / 0.0 sugar transporter 9 (.1)
Lus10018422
[exp]
474 / 3e-163 AT1G11260 835 / 0.0 sugar transporter 1 (.1)
Lus10002597
[exp]
460 / 3e-158 AT1G11260 798 / 0.0 sugar transporter 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF07690 MFS_1 Major Facilitator Superfamily
Representative CDS sequence
>Potri.009G042900.2 pacid=42771189 polypeptide=Potri.009G042900.2.p locus=Potri.009G042900 ID=Potri.009G042900.2.v4.1 annot-version=v4.1
ATGCTTCTGATCTGCTATCAAATTGACAAATTCCGAGAGGTATCAGATTTAGGTGAAACCATGCCCGAGTTAACCCTGGTCGATGGATCTGGTGTTCGTC
GGGACTTACCTGCCAAGCTTACATGGCAGGTCATTGTTTGTACCGTTATTTCAGCCTGTGGTGGTCTCATGTTCGGGTACGACATTGGAATTTCGGGAGG
AGTGACAGGAATGGATATGTTTTTGGAAAAGTTCTTCCCTGAAGTTTATGTCAAGAAGCATCAAGCTAAAGCAAACAACTACTGCAAATTTAACAGTCAA
CTTCTCCAGCTCTTCACATCTTCCCTCTACCTTGCAGCCATTGTAGCTTGCTTTATCGGCTCAATTTGTTGCAAGAAAAGGGGCCGCAAACCCACCATGC
AGATTGCCTCCGTCTTCTTTCTTGTTGGTGCCATTTTAAATGCTGCTGCTCTCAACATTGGCATGTTGATCGCTGGAAGGCTTTGTCTGGGCGCTGGAAT
TGGTTTTGGCAACCAGGCAGTGCCATTATTCATATCAGAAATTGCACCTGCAAGGTACAGAGGAGGCCTTAATCTTTGTTTTCAGCTCCTTATCACAATA
GGCATTCTAACAGCTAATGTGATCAATTATGCCACTTCAAAATTACACCCCTATGGTTGGAGAATTTCACTGGGTGGTGCAGCATGCCCTGCTTTACTTC
TCCTCCTTGGCTCTCTTATGATCGTGGAGACTCCGACGAGCCTCATAGAACGAGGGAAGAATGAAGAAGGGTTGTATACTTTGAAGAAGATTAGAGGCGT
TGATAATGTTGATAAAGAGTACGAAGAAATTTCGCAAGCTGTTGAATTTAGTAGACAAATCAGGCATCCCTTCAAGAACCTTTGGAAACAGTCAGGTAGG
CCTCAACTAGTATGCGGTGCACTTATTCAAATCTTCCAGCAGTTCACAGGCATCAGTGTGGTCATGCTTTATGCCCCAGTTCTCTTTCAAACCATGGGGT
TAGGTGAGAATGCATCATTGATGTCGGCTATAATGACTAATACAGTTAAACCAATAGGCACTGCGTTTGCAATTGTTGTGGTTGATAGATTTGGTAGAAG
AGCATTGCTCATTGAAGCAGCCATTCAGATGTTCATTTCTTTGGGTGCAATTGGAGTAATCCTCGCAGTGCATTTGCACTCCACAAACGTTGTGGCGAAA
CATTATGCCGTACTTGTGATCGTCTTGGTCTGTGTGTTCTTGGCTGGTTTTGCATGGTCATGGGGTCCCTTGGGATGGCTAATCCCAAGTGAAATATTCC
CGATAGAGACTCGAAGTGCTGGCTTCTCCGTTGCTGTTATTATGAATTTTGTTTTCACATTTCTTGTTGCTCAAACATTCCTCACCATGTTATGCCACAT
GCGAGCCGGGACTTTCTTCTTATACTGTGCTATGCTAGCTGTAATGTGCCTTTTTGCCAAATACTTTCTACCTGAGACGAAAGGAATCCCAATTGATGAA
ATGGTGGAAAGAGTGTGGAAGCAGCACTGGTTCTGGAAGAGGTACTACAAGGATCATGATACTGGTAAAGGAGGGCTGGAAATCCAAGATAAACCTAAGG
AGAATACAATTGCATAG
AA sequence
>Potri.009G042900.2 pacid=42771189 polypeptide=Potri.009G042900.2.p locus=Potri.009G042900 ID=Potri.009G042900.2.v4.1 annot-version=v4.1
MLLICYQIDKFREVSDLGETMPELTLVDGSGVRRDLPAKLTWQVIVCTVISACGGLMFGYDIGISGGVTGMDMFLEKFFPEVYVKKHQAKANNYCKFNSQ
LLQLFTSSLYLAAIVACFIGSICCKKRGRKPTMQIASVFFLVGAILNAAALNIGMLIAGRLCLGAGIGFGNQAVPLFISEIAPARYRGGLNLCFQLLITI
GILTANVINYATSKLHPYGWRISLGGAACPALLLLLGSLMIVETPTSLIERGKNEEGLYTLKKIRGVDNVDKEYEEISQAVEFSRQIRHPFKNLWKQSGR
PQLVCGALIQIFQQFTGISVVMLYAPVLFQTMGLGENASLMSAIMTNTVKPIGTAFAIVVVDRFGRRALLIEAAIQMFISLGAIGVILAVHLHSTNVVAK
HYAVLVIVLVCVFLAGFAWSWGPLGWLIPSEIFPIETRSAGFSVAVIMNFVFTFLVAQTFLTMLCHMRAGTFFLYCAMLAVMCLFAKYFLPETKGIPIDE
MVERVWKQHWFWKRYYKDHDTGKGGLEIQDKPKENTIA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Download tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G26250 Major facilitator superfamily ... Potri.009G042900
[exp]
0 1

Potri.009G042900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.