Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17910 143 / 5e-34 unknown protein AT1G07330 129 / 3e-30 unknown protein AT2G29620 125 / 4e-29 unknown protein AT5G58880 120 / 4e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G249000 [exp] 1845 / 0 AT5G17910 134 / 2e-31 unknown protein Potri.013G068800 [exp] 128 / 2e-29 AT5G17910 437 / 3e-129 unknown protein Potri.019G044500 [exp] 124 / 2e-28 AT5G17910 296 / 1e-82 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001202 [exp] 226 / 1e-59 AT2G29620 144 / 6e-35 unknown protein Lus10005869 [exp] 155 / 6e-38 AT5G58880 144 / 6e-35 unknown protein Lus10020367 [exp] 92 / 7e-19 AT5G17910 250 / 2e-73 unknown protein Lus10009543 [exp] 92 / 1e-18 AT2G29620 249 / 1e-71 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G043000.1 pacid=42772049 polypeptide=Potri.009G043000.1.p locus=Potri.009G043000 ID=Potri.009G043000.1.v4.1 annot-version=v4.1 ATGGGTATTGATGCAAAGGAATTTCAAGCTTTCATGTGGAGAGTTCTTAAACTTTCCATGAGTTCTTGCTCTGCATTTGTACAAAAATATCCATTTGCTT CAGGTTTTTCGTTAACCTTGCTGGCTTTATACTTGTTTTTTCCTTCAGTTTTCTATTTCTTGATTTACTCTTTACCATTTCTTGGTTGCACTGCTGTTTT TATTCGTTATTATTTGAATTCGCAAAAACATGGGGTGGTTGAGAGGAAGGAACATGGAATATCATCTGACGCAGCTGATGCTGCCAATAGAGATGATAAC TCTTCTATTGAAGCTCGAAGAATGTTGCAGAGAAACGTCAACGAGAATAAAGACAAATCGGATACACACGCTGTTAAAGACGAAAAGAACATGGTTTCCT CCATGCCTTCAAATGATGATTTCATTGGCAGAACTGCCTTGGTCGAACAAAAACCGAAAGTAATCATGGAGGAGAAAGCAAGCTATGCTTTGAATAGTGG AGAAAGTTCCTCTTACAATGTTTCCCTTGGTGAGAATATTTCAGAATTCAGCGAGGCATCAAATCCTGAGACTGTCTCATTTGATGGCTTTAATGAGCAG CCTGCAAAACTTCTTGTTGGTGGTGAGGTGGAGTCGGAGAGCTCAAGCTCTGAAGTAGATGATGAAGAAGAAGAATCAGAAAAGGGTTGCAAAAACGCTG TAGAATGGACTGCGAATGATCAAAAGAATCTCATGGATCTTGGGGATTCTGAGCTAGAAAGAAATAGGAGGCTGGAGAGCCTAATTGCAAGACGTAGAGC AAGAAAGTCATTCAAAATGAGTAGTAGTGCTGCTCCAGGTACAATGCATCCTGTTTTGGTTGCAAGAAGCAACACTTTCCATGTTTCTAAGAGTTCAGAT GACCGAATACCTAGTTCAGCCCCTTCTATTTTGTTACCAACCCAAAATCCATTTGACCTTCCATATGAACCATTTGAAGAAAAACCTAATCTCATGGCAG ACAGTTTCCAGCAAGAATTTATGGCAGATCACCTGAAAGAAATGCTCTTCTGCAGGCATGAGAGCTTCTCTTTGGGATATTCTCCCCCCCTGGAGAACAC ACAATTAGATCAACATGAGGGCACAGGATATTCTAGATCTAAAATGCAATTAGACAAGGAAAATCATGGCCCGCTGGCTGATCATTCATTATTCCAACGT GGTGAAACCTTGCGCCGTGATTTAACTGTAACTGATCTTGTGACGGAAGAAGCCCGATCTTCCAATCAGGTTACTAACAAACGGGAACGGGATAGAGAAG TTGAAACCAGTAGAGTCAAACACAAAGGTGAAAATATGGGACAATCTCATGACAAGGATCCAAGTTTAGGTGATGGAAATGATATTCAAAGGGACACAGA TCTAATCAAGCACAAGAAAATTTGGCCAAGACCATTTTCTTCTACAGAAAACATTTTTAATGCTAAGACAGCTGAGAATTCAGAAAGTCTACAGCCAACA ACGTTCAAATTTCCCGTAGTGTTTTATAATCGTGCACCGAACTCTCTCCCTTGTTCAGTTCCTAAGGCTAGTGCCGTGGCTGAACCTTCATATGATTCCA GCCCGTCTGCAATTTACAACACAGGAATGGAGGAACATTTTTTTTACAAGCACAAGGATCCTTGGCATACCCATACCAATTCCATAGCTTCTGACATGCA AGTGGAGGTCTCAGAGATCGGTTCACCCCCTCTGACAGCAGACGGAATTGCTTCATCCAATGATGGTGAGTCCTTGGTTTATGATGGGGATAGTGAACAG GAAATTACTTCCGGGAGTGAAGATATGTGGGGAGCTTCGCCTCTTGCTCCAAAGGTTCAAGAAAATGAAAACGTAACTAGACAAATATACGAGGTAGGGG AGGGGGATATTACAGAAGAAGGGTATTCAAGGCTCAGGAATGAACCCGAGGATCCAACTTCATCATCACTTTGGTCGCTATCATCTTCAAGAGCTGAAAT ATCTCAAGAGGATCAAGCCCATTCAATGAGCATTGATCCAAAACACTTTAATTATGTCAAACACATAGTCGAAGAGGAAAGGGAGCAGAGGCCTTCTAAT CCTTCAGATGTAGTTCCACCTGAACATTCCCAGGAAGGAATGCAACTGATGGAGGATTCAATGCCACAAAAACCTTCTGAGGTGTACTTTCAGAAGCCGC AGGAATCAAGGAATGCTCCTGGGAATTCTGCAGAAGAGATGAACATAAATTGCGATGCAGATGACACGGTCACATACGATGACAGGGGAGATTTGAAATC AAACGAAAACATATATGTTGGAGCTGAAAACTCCATGATGCAAGTAGTTATAGCCAATCTATCAGAACCGGCTGAGGGAAGTAATTCAAAATCTAACAGC GATATCATGAGCGAATCATTGATTAATCCTGAGAAGTCTGTAGAGGGTATGGACGGCAGTTGCAATGTAAATGACTCGAGGCTCCTCGTAAATGACCACT TAGAAGACTCGAAATCAAATGAAGACAGAGATAGTGGAGCTGAAAAAGCCATGCAAGTACTCGTAAGTGATCAGTCACAACCAGATGTTGAAAGTAATTC AGAATCTAGAAAGCATATAGAGAGCAAATCATTAAATTCTCCTGAGAAGTCTGGAGAAGATGCAAACATTACTTACAATGTGAATGATCCATTTGTTCAC ATTAAGAATAGCGTGGAAGAATTAGAATCTATTGAAGATATTGACCGAGATTATGAAAGGCTGACTGAACATTCAGACATTAAGAGCACTTCAATGCCAG TCGAGGTTGAAGACAACCCGACTTCAACTCAAGGCAGTAGAGAAGATCAAAGTACATTAATAGAAGTTGGGGTTTCTGGGGCAAACCGAAGTTTTAATGA TCCCACTACATCAGGCATACTGCCAGAATTGATAGTTGAACAAGCTTCTACCAACTCAAGTCTATCCTCATCTCCAAAGTCTGTTTTAGCATATAGGATC CCAGCAGATATAGGTTCTTCATCAGATTTCAGTCAACTGGTGTCCACTGATATGGAGGAAAGATTGCCTCTGACTGCAACTCAAGATACCAGTCATGTGG TAAATGATTCGGTAGATCACCCATCTATTGATAACAAATCTGAAAAATCTGAGGAACCGTCTAACACTCAAGGGAAGCCTACTGAAGAAGCTATTGAGAT GGAGAATATGAAGGGATCATCGCTTGATGACGAGGAAACCATGGAGGATTTAAAATCCAGGAAAAACATAGATGACGAATCAGAAACATCGATTGGTAAT GACGCACCTGTAAAACTGTCAAAACCACAGAAGGAAATTAGCCCCAGATCTTTCGAGCATCTTGAAGATGCATCTGCAAGACTCGCTGACAATGAAACAA ACATTGATGTTTCAAAATCCGAGGGGGAGCATTCTACTTCAGATGTTCCTGGACTTATGGTAGAAGAAGAGGAGTCAACAAATCGTTCAAGAGATGTTGC TGGAGAAGTTAACCTCATCAGTGAAGTTAGTGATCCATCGATAAATAAAAAGGAAGATTTGGAGAAGTTAAGGTTTTTTGAAGGCAGTGAAGGTGAACCT CAATTTCCAACTAGACGGGAGATATTTGTGGAACCAGTAAAACCAGCCAACATCACTTCCCTAGAGGACCATGACTACAGTCCTGGAGTATTAACTGAAA ATGAAACAATTGTCGTATCATCTCAAGCAATGGAGGATGTTGATAATTCAAGCAACAGCAAGGAAACTGACGGGTTTGGAACACGTAGAGCAGATCAGGA AATTGGAGACTTGTTAAAGCCAGCAGGTGCCATTGGCACCTCAGAAACCACCAAGGATGTCCAAGGGAACCCTAAAGATTTAACAGATCAAAAGGCTGTC TTTGACCCATCAAAACCGGCAGTTGATGGTGAAAATATCTTAGTGACTCTTGAAGCAAAGGACTCTGCAGCTGACATAATTCATAATGTGAATGAAGCAG TTGCGAGTGAATTTATAAACAATGAGAAGTTCAATCATGTACAAGACAGTGAAGATGACGAATCTCAAAGACTAGATAGCCAAGAAAATATTACGGAACC ACTTAAAGCAGTGGCGTTTACAAATTCAGAATCCATCAGGGACCTTGAAAGTGAATCAAAAATATTGGTTGAAGATGAAGTTAATGTCATCCCATCATAT CCGGCAGGGGAAATTAACAGTTCAAATGACAGAGAAAACACAGAGGATCCTGGAAAGTCAACTGTTCATTTAACTGTTATGACCATATCCGAGCCAAGCA GGGGTTATGTCAAGCAGGATCCTGGAAGCTGA
AA sequence Show only first row Show all	>Potri.009G043000.1 pacid=42772049 polypeptide=Potri.009G043000.1.p locus=Potri.009G043000 ID=Potri.009G043000.1.v4.1 annot-version=v4.1 MGIDAKEFQAFMWRVLKLSMSSCSAFVQKYPFASGFSLTLLALYLFFPSVFYFLIYSLPFLGCTAVFIRYYLNSQKHGVVERKEHGISSDAADAANRDDN SSIEARRMLQRNVNENKDKSDTHAVKDEKNMVSSMPSNDDFIGRTALVEQKPKVIMEEKASYALNSGESSSYNVSLGENISEFSEASNPETVSFDGFNEQ PAKLLVGGEVESESSSSEVDDEEEESEKGCKNAVEWTANDQKNLMDLGDSELERNRRLESLIARRRARKSFKMSSSAAPGTMHPVLVARSNTFHVSKSSD DRIPSSAPSILLPTQNPFDLPYEPFEEKPNLMADSFQQEFMADHLKEMLFCRHESFSLGYSPPLENTQLDQHEGTGYSRSKMQLDKENHGPLADHSLFQR GETLRRDLTVTDLVTEEARSSNQVTNKRERDREVETSRVKHKGENMGQSHDKDPSLGDGNDIQRDTDLIKHKKIWPRPFSSTENIFNAKTAENSESLQPT TFKFPVVFYNRAPNSLPCSVPKASAVAEPSYDSSPSAIYNTGMEEHFFYKHKDPWHTHTNSIASDMQVEVSEIGSPPLTADGIASSNDGESLVYDGDSEQ EITSGSEDMWGASPLAPKVQENENVTRQIYEVGEGDITEEGYSRLRNEPEDPTSSSLWSLSSSRAEISQEDQAHSMSIDPKHFNYVKHIVEEEREQRPSN PSDVVPPEHSQEGMQLMEDSMPQKPSEVYFQKPQESRNAPGNSAEEMNINCDADDTVTYDDRGDLKSNENIYVGAENSMMQVVIANLSEPAEGSNSKSNS DIMSESLINPEKSVEGMDGSCNVNDSRLLVNDHLEDSKSNEDRDSGAEKAMQVLVSDQSQPDVESNSESRKHIESKSLNSPEKSGEDANITYNVNDPFVH IKNSVEELESIEDIDRDYERLTEHSDIKSTSMPVEVEDNPTSTQGSREDQSTLIEVGVSGANRSFNDPTTSGILPELIVEQASTNSSLSSSPKSVLAYRI PADIGSSSDFSQLVSTDMEERLPLTATQDTSHVVNDSVDHPSIDNKSEKSEEPSNTQGKPTEEAIEMENMKGSSLDDEETMEDLKSRKNIDDESETSIGN DAPVKLSKPQKEISPRSFEHLEDASARLADNETNIDVSKSEGEHSTSDVPGLMVEEEESTNRSRDVAGEVNLISEVSDPSINKKEDLEKLRFFEGSEGEP QFPTRREIFVEPVKPANITSLEDHDYSPGVLTENETIVVSSQAMEDVDNSSNSKETDGFGTRRADQEIGDLLKPAGAIGTSETTKDVQGNPKDLTDQKAV FDPSKPAVDGENILVTLEAKDSAADIIHNVNEAVASEFINNEKFNHVQDSEDDESQRLDSQENITEPLKAVAFTNSESIRDLESESKILVEDEVNVIPSY PAGEINSSNDRENTEDPGKSTVHLTVMTISEPSRGYVKQDPGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29620			unknown protein		Potri.009G043000 [exp]	0	1
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.003G218300 [exp]	7.21	0.7280
AT4G16447			unknown protein		Potri.011G086300 [exp]	8.36	0.7051
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.006G001600 [exp]	19.62	0.6884
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Potri.014G099600 [exp]	20.49	0.5863
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.005G026950 [exp]	23.23	0.5760
AT1G34065		SAMC2	S-adenosylmethionine carrier 2...		Potri.002G063901 [exp]	31.74	0.5553
AT1G22110			structural constituent of ribo...		Potri.005G169900 [exp]	33.36	0.5498
					Potri.013G104501 [exp]	33.49	0.5518
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Potri.001G256600 [exp]	47.53	0.6449
AT1G24400		ATLHT2, AATL2, ...	ARABIDOPSIS LYSINE HISTIDINE T...		Potri.008G179000 [exp]	55.50	0.6287

Compare expression of checked genes

Potri.009G043000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.