Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58870 1038 / 0 FTSH9 FTSH protease 9 (.1) AT3G47060 1016 / 0 FTSH7 FTSH protease 7 (.1) AT1G06430 339 / 1e-105 FTSH8 FTSH protease 8 (.1) AT2G30950 337 / 9e-105 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G50250 337 / 2e-104 FTSH1 FTSH protease 1 (.1) AT5G42270 330 / 8e-102 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT5G15250 321 / 9e-99 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G07510 308 / 7e-93 FTSH10 FTSH protease 10 (.1) AT2G29080 306 / 5e-92 FTSH3 FTSH protease 3 (.1) AT5G53170 291 / 1e-86 FTSH11 FTSH protease 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G249100 [exp] 1252 / 0 AT5G58870 997 / 0.0 FTSH protease 9 (.1) Potri.002G215100 [exp] 339 / 2e-105 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 339 / 2e-105 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 338 / 8e-105 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 337 / 2e-104 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 319 / 5e-98 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.009G033600 [exp] 317 / 5e-96 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.016G099800 [exp] 306 / 5e-92 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.006G227700 [exp] 287 / 7e-86 AT2G26140 1066 / 0.0 FTSH protease 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005868 [exp] 1124 / 0 AT5G58870 1105 / 0.0 FTSH protease 9 (.1) Lus10001203 [exp] 1120 / 0 AT5G58870 1093 / 0.0 FTSH protease 9 (.1) Lus10018210 [exp] 1019 / 0 AT5G58870 1049 / 0.0 FTSH protease 9 (.1) Lus10040695 [exp] 1018 / 0 AT5G58870 1047 / 0.0 FTSH protease 9 (.1) Lus10012277 [exp] 340 / 2e-108 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 340 / 2e-105 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 338 / 3e-105 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10016003 [exp] 338 / 1e-104 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001420 [exp] 338 / 4e-104 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001573 [exp] 307 / 3e-92 AT1G07510 1194 / 0.0 FTSH protease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01434 [poplar] [flax] Peptidase_M41 Peptidase family M41 CL0126 [poplar] [flax] PF06480 [poplar] [flax] FtsH_ext FtsH Extracellular CL0023 [poplar] [flax] P-loop_NTPase PF07724 [poplar] [flax] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Potri.009G043100.5 pacid=42772474 polypeptide=Potri.009G043100.5.p locus=Potri.009G043100 ID=Potri.009G043100.5.v4.1 annot-version=v4.1 ATGCTAGAAACTCTAAGACCAATAACATACATTTCTGCTACTTCTTCTACAGTTAAATTTCAATACTGTAGACTCCAATCTAGGGTTTTCCACCACCGTT TTATCCCTATTAATAGTTCCCTTACTTTGCCTTCAATTAACCCTAAATCCTTCAATTTTTTATCGAATACCAAAATCAGAGACTATAAAATCTTAGCCAG ATGTCAAGATAGCGATTCTACCGAGAAAACAAGCACCGAAACCGAGCCACAAAACAACCCACCACCATCACCGCCATCGTCGAATTCAGGGTCAAAGCAG AAGAGAGAGAAGCAAGGGAAAAGCCAATGGTGGTTTTCCAAGAAGCAGAATTGGAAATGGCAACCTTTAATTCAAGCGCAAGAAATTGGTGTCTTGCTTT TGCAATTAGGGATTGTTATGTTCGTTATGCGGTTGCTTCGACCCGGGATTCCTTTGCCCGGGTCGGAGCCAAGGCAACCCACTACTTTTGTCAGCGTGCC GTATAGTGAGTTTTTGGGTAAAATTAGTAGTAATCATGTGCAAAAAGTGGAGGTTGATGGTGTGCATATAATGTTTAAGTTGAAAGATGAAGGAGTTAGT GGTCAAGAGAGTAGCAGTGAAGTGGTTGATAGCAAGTTTCAAGACTCGGAATCTTTGTTAAGGAGTGTGACGCCTACTATGAAAAAGATTTTGTATACTA CGACGAGGCCTACTGATATTAAGACTCCGTATGAGAAAATGCTGGAGAATCAGGTGGAGTTTGGTTCGCCTGATAAGAGGTCCGGTGGATTCTTGAATTC AGCATTGATAGCTTTGTTCTACGTAGCTGTGCTTGCAGGGCTTCTTCAACGTTTCCCTGTTACCTTTTCTCAGCATACAGCTGGTCAGGTTAGGAACCGT AAGTCTGGGGGTTCTGGAGGTTCAAAAGTGTCTGAGCAAGGTGAAACAATAACTTTTGCTGATGTTGCTGGGGTTGATGAAGCTAAAGAAGAGCTAGAAG AAATTGTGGAATTTCTCAGGAATCCAGACAGGTATACAAGACTTGGTGCTCGTCCTCCTCGAGGTGTTCTCCTGGTGGGCCTTCCTGGGACAGGTAAGAC TCTTCTAGCAAAGGCTGTTGCTGGAGAAGCTGAAGTTCCCTTTATAAGTTGTTCTGCAAGTGAATTTGTTGAGTTGTATGTTGGCATGGGTGCCTCCCGT GTGAGAGATCTCTTTGCCCGGGCAAAGAAGGAGGCACCATCAATAATATTTATTGATGAGATAGATGCTGTGGCTAAAAGTCGTGATGGAAAATACCGCA TTGTTAGCAATGATGAAAGGGAGCAGACTTTGAATCAGTTGCTCACTGAGATGGATGGGTTTGATAGCAACTCTGCTGTTATTGTTCTTGGTGCAACAAA TCGCTCAGATGTGTTAGACCCTGCACTTCGCCGACCAGGAAGATTTGATCGTGTGGTTATGGTGGAAACACCTGATAGGAATGGAAGAGAAGCCATTTTA AAAGTACATGTTTCCAAGAAAGAACTGCCTCTGGGAGAGGATGTTAACCTCAGTGACATTGCCTCTATGACTACTGGTTTAACTGGGGCAGATCTTGCAA ATCTGGTAAACGAAGCTGCTTTGTTGGCTGGAAGGAAAAACAAAGTACTAGTGGAGAAATTTGATTTCATTCAGGCAGTGGAGCGGTCAATAGCTGGCAT TGAGAAGAAGACTGTCAAGTTGCAAGGAAGCGAGAAGGCTGTGGTTGCACGTCATGAAGCTGGCCATGCAGTAGTAGGTACTGCTGTTGCTAATATTCTT ACTGGACAGCCACGTGTAGAGAAGTTGAGCATATTACCAAGGTCAGGAGGGGCTTTGGGCTTTACTTATACACCCCCAACAAATGAGGATAGATATTTGC TCTTCATTGATGAGTTGCGTGGCCGCTTGGTTACTCTTCTTGGAGGACGGGCAGCAGAAGAAGTTGTTTATTCAGGTCGTGTCTCGACAGGTGCCCTGGA TGATATTCGGCGGGCTACTGATATGGCATACAAAGCAGTAGCTGAATATGGTCTTAATCAGACAATAGGTCCCGTGTCTCTAGCAACACTTTCTGGAGGA GGGATGGATGAATCTGGAGCTGCTCCATGGGGAAGGGATCAGGGGCATCTTGTTGATCTTGTTCAAAGAGAGGTGAAAGCATTGCTGCAATCTGCCCTTG ATGTAGCACTTTCTGTTGTGCGTGCTAATCCAACTGTCTTGGAGGGGCTTGGTGCCCATCTGGAAGAGAAAGAGAAAGTAGAAGGTGAGGAGCTGCAAGA GTGGTTGAAGTTGGTAGTTGCTCCAAAAGAGCTAGCTCTCTTTGTCGAAGGCAAGCAAGAGTCATTTCTCCCGCTATAA
AA sequence Show only first row Show all	>Potri.009G043100.5 pacid=42772474 polypeptide=Potri.009G043100.5.p locus=Potri.009G043100 ID=Potri.009G043100.5.v4.1 annot-version=v4.1 MLETLRPITYISATSSTVKFQYCRLQSRVFHHRFIPINSSLTLPSINPKSFNFLSNTKIRDYKILARCQDSDSTEKTSTETEPQNNPPPSPPSSNSGSKQ KREKQGKSQWWFSKKQNWKWQPLIQAQEIGVLLLQLGIVMFVMRLLRPGIPLPGSEPRQPTTFVSVPYSEFLGKISSNHVQKVEVDGVHIMFKLKDEGVS GQESSSEVVDSKFQDSESLLRSVTPTMKKILYTTTRPTDIKTPYEKMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLQRFPVTFSQHTAGQVRNR KSGGSGGSKVSEQGETITFADVAGVDEAKEELEEIVEFLRNPDRYTRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASR VRDLFARAKKEAPSIIFIDEIDAVAKSRDGKYRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDRNGREAIL KVHVSKKELPLGEDVNLSDIASMTTGLTGADLANLVNEAALLAGRKNKVLVEKFDFIQAVERSIAGIEKKTVKLQGSEKAVVARHEAGHAVVGTAVANIL TGQPRVEKLSILPRSGGALGFTYTPPTNEDRYLLFIDELRGRLVTLLGGRAAEEVVYSGRVSTGALDDIRRATDMAYKAVAEYGLNQTIGPVSLATLSGG GMDESGAAPWGRDQGHLVDLVQREVKALLQSALDVALSVVRANPTVLEGLGAHLEEKEKVEGEELQEWLKLVVAPKELALFVEGKQESFLPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.009G043100 [exp]	0	1
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Potri.005G126000 [exp]	2.00	0.9109
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.013G089000 [exp]	2.44	0.9125
AT2G39950			unknown protein		Potri.010G192800 [exp]	4.79	0.8749
AT4G31040			CemA-like proton extrusion pro...		Potri.018G150000 [exp]	6.00	0.8967
AT1G48650			DEA(D/H)-box RNA helicase fami...		Potri.015G042500 [exp]	7.41	0.9027
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Potri.001G327000 [exp]	13.85	0.8873
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Potri.017G116700 [exp]	15.71	0.8829
AT3G26922			F-box/RNI-like superfamily pro...		Potri.011G104300 [exp]	16.70	0.8657
AT3G18770			Autophagy-related protein 13 (...		Potri.001G309800 [exp]	17.29	0.8898
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.004G048600 [exp]	17.74	0.8820

Compare expression of checked genes

Potri.009G043100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.