Plant FIBer expression Database

Potri.009G043200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G29630 1115 / 0 PY, THIC PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G249200
[exp]
1251 / 0 AT2G29630 1113 / 0.0 PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018211
[exp]
1147 / 0 AT2G29630 1144 / 0.0 PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
Lus10040694
[exp]
1144 / 0 AT2G29630 1141 / 0.0 PYRIMIDINE REQUIRING, thiaminC (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF01964 ThiC_Rad_SAM Radical SAM ThiC family
Representative CDS sequence
>Potri.009G043200.3 pacid=42772667 polypeptide=Potri.009G043200.3.p locus=Potri.009G043200 ID=Potri.009G043200.3.v4.1 annot-version=v4.1
ATGGCGTCTGTCCAAGCCACTGCTATCTTGATATCCTCAGCTGTAACCAAGAATGGCAATACCACTGCCTGCTTGCCACTTGGATTTGTTATTTCACGTG
CTGCATGCAAGAAGGAGTTTTGCGCTCACTCTATGGCGTCGGGAGCCAGAGCTACTCTCACATTTGATCCACCAACAAGAACTAACCAAAAGAAGCACAC
AGTCGATCCTTCTTCTCCTGACTTTCTTCCTCTTCCTTCTTTTGAACAGTGTTTTCCAAAGAGCACCAAAGAATACAGGGAAGTTAAACATGAAGAATCT
GGTCATGTACTAAAAGTTCCGTTCCGGCGAGTCCATTTGTCCGGCGATGAACCAGGTTTTGATAACTACGATACCAGTGGTCCTCAAAACATCAGTCCCC
GCGTAGGACTTCCTAAGCTTCGTAAAGAATGGGTTGACAGGCGGGAGAAGCTAGGTACACCAAGGTACACTCAGATGTATTATGCGAAGCAGGGAATTAT
AACCGAGGAAATGCTGTACTGTGCTGCTCGTGAAAAGCTTGATCCGGAGTTTGTGAGGTCAGAGGTTGCACGTGGGAGGGCAATTATCCCTTCCAACAAG
AAGCACTTGGAGCTGGAACCGATGATTGTTGGAAGAAATTTTTTGGTTAAAGTTAATGCAAATATTGGAAATTCTGCTGTTGCGAGCTCTATCGAGGAAG
AAGTTTATAAGGTTCAATGGGCAACTATGTGGGGTGCCGATACTGTTATGGATCTTTCCACTGGTCGCCACATTCATGAGACTCGGGAGTGGATCCTACG
TAACTCTGCTGTGCCAGTAGGTACTGTGCCTATCTATCAAGCACTTGAGAAAGTAAATGGAATTGCTGAAAACCTTAGCTGGGAAGTCTTCAGAGAAACC
CTGATTGAACAAGCTGAGCAGGGTGTAGATTATTTCACAATTCATGCCGGGGTTCTGCTGCGGTACATCCCCTTAACTGCAAAGCGCATGACAGGAATTG
TTTCACGAGGAGGATCAATCCATGCTAAGTGGTGCTTAACTTATCACAAGGAGAACTTTGCCTATGAGCACTGGGATGATATTCTTGACATATGCAACCA
ATATGATGTGGCCCTGTCAATTGGCGATGGACTGAGGCCTGGTTCCATATATGATGCCAATGACACTGCCCAATTCGCAGAGCTTTTAACTCAAGGGGAA
CTGACTCGTCGAGCATGGGAAAAGGATGTACAGGTTATGAATGAAGGGCCTGGACATATTCCAATGCACAAGATTCCTGAGAACATGCAAAAACAGCTAG
AGTGGTGCAATGAAGCTCCTTTCTATACTCTTGGACCCCTAACAACAGACATTGCTCCTGGATATGACCACATAACCTCTGCCATTGGCGCTGCCAATAT
TGGGGCTCTTGGCACTGCACTTCTCTGTTATGTCACACCAAAGGAGCACCTTGGACTGCCAAATAGAGATGATGTGAAGACTGGGGTTATAGCATACAAG
ATATCTGCTCATGCTGCTGATTTGGCAAAAGGTCACCCCCATGCTCAAGCCTGGGATGATGCTTTAAGCAAGGCTAGATTTGAGTTCCGATGGATGGATC
AGTTTGCTCTATCATTGGACCCCATGACGGCCATGTCCTTCCATGATGAAACCCTCCCATCAGAAGGTGCAAAAGTGGCACATTTTTGCTCCATGTGCGG
ACCTAAGTTCTGCTCTATGAAGATAACAGAAGATGTTCGAAAGTATGCAGAGGAGCATGGTTATGGTAATGCAGAGGAAGCTGTGCAACATGGGATGGAT
GCCATGAGCGCTGAGTTCCTGGCTGCTAGGAAAACTATAAGCGGAGAACAACATGGTGAAGTTGGTGGAGAAATTTACCTGCCAGCAAGCTACATCAGTT
CCTCTGAGAGGTGA
AA sequence
>Potri.009G043200.3 pacid=42772667 polypeptide=Potri.009G043200.3.p locus=Potri.009G043200 ID=Potri.009G043200.3.v4.1 annot-version=v4.1
MASVQATAILISSAVTKNGNTTACLPLGFVISRAACKKEFCAHSMASGARATLTFDPPTRTNQKKHTVDPSSPDFLPLPSFEQCFPKSTKEYREVKHEES
GHVLKVPFRRVHLSGDEPGFDNYDTSGPQNISPRVGLPKLRKEWVDRREKLGTPRYTQMYYAKQGIITEEMLYCAAREKLDPEFVRSEVARGRAIIPSNK
KHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVNGIAENLSWEVFRET
LIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLTYHKENFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGE
LTRRAWEKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKTGVIAYK
ISAHAADLAKGHPHAQAWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGNAEEAVQHGMD
AMSAEFLAARKTISGEQHGEVGGEIYLPASYISSSER

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G29630 PY, THIC PYRIMIDINE REQUIRING, thiaminC... Potri.009G043200
[exp]
0 1
AT3G12080 EMB2738 embryo defective 2738, GTP-bin... Potri.009G054200
[exp]
2.00 0.9672
AT2G29630 PY, THIC PYRIMIDINE REQUIRING, thiaminC... Potri.001G249200
[exp]
2.44 0.9692
AT1G76110 ARID HMG (high mobility group) box ... Potri.005G246700
[exp]
3.46 0.9640
AT1G51550 Kelch repeat-containing F-box ... Potri.010G252200
[exp]
4.00 0.9610
AT2G48070 RPH1 resistance to phytophthora 1 (... Potri.014G137300
[exp]
4.00 0.9713
AT1G45110 Tetrapyrrole (Corrin/Porphyrin... Potri.002G030701
[exp]
4.89 0.9595
AT1G64860 SIGB, SIG2, SIG... RNApolymerase sigma subunit 2,... Potri.013G075400
[exp]
6.24 0.9677
AT3G14470 NB-ARC domain-containing disea... Potri.017G145000
[exp]
8.94 0.9502
AT1G49380 cytochrome c biogenesis protei... Potri.009G111692
[exp]
9.16 0.9629
AT5G12950 Putative glycosyl hydrolase of... Potri.003G206000
[exp]
10.19 0.9471

Potri.009G043200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.