Plant FIBer expression Database

Potri.009G043501 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G07300 40 / 7e-05 josephin protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G249500
[exp]
100 / 5e-28 AT1G07300 49 / 2e-08 josephin protein-related (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.009G043501.1 pacid=42772616 polypeptide=Potri.009G043501.1.p locus=Potri.009G043501 ID=Potri.009G043501.1.v4.1 annot-version=v4.1
ATGTCAACAAGGATTAATCAAGTGAAACACAAACCTGCTGGTACCAGCAGAACACAATATCCACCAACTAGAGACAGAGTTTCTGGGAATAGATGGCCTG
GTCGAAATTGTGGGTTCAGGCTCCTGAAAAGATCAATAGTGTCACCAGTGAAATTTCTCAAGCATTTTGGCAGGAAGGTCGCAAAAGCTGTGTGTTTAGG
GAGGCGATCTTCACCTGGAGTTTCTTCTTCAGGAAGATCAAAACCATCTGTAGCTCCTAGTGATACTCACATAGCTGAAGCCATAGAAGATTGCATTGAC
TTCATTAACTCTTCTTCTCTGCCGAGGTCAAATTCTGTTTCTGCAAATCCTAGTTAA
AA sequence
>Potri.009G043501.1 pacid=42772616 polypeptide=Potri.009G043501.1.p locus=Potri.009G043501 ID=Potri.009G043501.1.v4.1 annot-version=v4.1
MSTRINQVKHKPAGTSRTQYPPTRDRVSGNRWPGRNCGFRLLKRSIVSPVKFLKHFGRKVAKAVCLGRRSSPGVSSSGRSKPSVAPSDTHIAEAIEDCID
FINSSSLPRSNSVSANPS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G07300 josephin protein-related (.1) Potri.009G043501
[exp]
0 1
AT5G25260 SPFH/Band 7/PHB domain-contain... Potri.006G258900
[exp]
4.69 0.8349
AT4G23990 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE... Potri.003G142400
[exp]
20.63 0.7947
AT5G44170 S-adenosyl-L-methionine-depend... Potri.001G148200
[exp]
21.35 0.8060
AT3G12750 ZIP1 zinc transporter 1 precursor (... Potri.010G173300
[exp]
23.51 0.7909 ZIP1.1
AT3G14840 Leucine-rich repeat transmembr... Potri.001G385500
[exp]
24.97 0.7884
AT5G45540 Protein of unknown function (D... Potri.007G123100
[exp]
25.09 0.8057
AT3G62270 HCO3- transporter family (.1) Potri.015G077600
[exp]
32.00 0.7768
AT2G46660 CYP78A6 "cytochrome P450, family 78, s... Potri.002G175200
[exp]
33.13 0.7840 Pt-CYP78.1
AT2G23440 unknown protein Potri.007G041400
[exp]
42.07 0.7768
AT1G77210 AtSTP14 sugar transport protein 14, su... Potri.001G253800
[exp]
46.64 0.7497

Potri.009G043501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.