Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29660 332 / 3e-112 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G54630 190 / 8e-56 C2H2ZnF zinc finger protein-related (.1) AT4G27240 188 / 2e-55 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G75710 184 / 2e-53 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G11490 134 / 1e-35 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT4G22560 113 / 8e-29 unknown protein AT1G62520 112 / 2e-28 unknown protein AT4G12450 107 / 1e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G249900 [exp] 608 / 0 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.005G173400 [exp] 207 / 1e-62 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.005G238300 [exp] 195 / 2e-58 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 194 / 6e-58 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.011G131300 [exp] 192 / 7e-57 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.001G415600 [exp] 188 / 2e-55 AT5G54630 520 / 0.0 zinc finger protein-related (.1) Potri.002G023200 [exp] 184 / 5e-54 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.004G030800 [exp] 171 / 4e-49 AT5G54630 385 / 3e-131 zinc finger protein-related (.1) Potri.003G111800 [exp] 121 / 9e-32 AT4G22560 263 / 3e-88 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018219 [exp] 375 / 4e-128 AT2G29660 323 / 4e-108 zinc finger (C2H2 type) family protein (.1) Lus10040685 [exp] 372 / 5e-127 AT2G29660 322 / 9e-108 zinc finger (C2H2 type) family protein (.1) Lus10034522 [exp] 206 / 2e-62 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10033148 [exp] 206 / 2e-62 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10024333 [exp] 193 / 3e-59 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10043080 [exp] 197 / 8e-59 AT5G54630 566 / 0.0 zinc finger protein-related (.1) Lus10028083 [exp] 186 / 2e-54 AT1G75710 284 / 4e-91 C2H2-like zinc finger protein (.1) Lus10025632 [exp] 184 / 6e-54 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1) Lus10018388 [exp] 144 / 4e-39 AT5G54630 336 / 5e-112 zinc finger protein-related (.1) Lus10007625 [exp] 133 / 8e-34 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G043900.1 pacid=42772100 polypeptide=Potri.009G043900.1.p locus=Potri.009G043900 ID=Potri.009G043900.1.v4.1 annot-version=v4.1 ATGGCACCCGATATAGGATCAGTCTTTAACAAATTCCTATCTCTCTTTGTCCTTCTTCTCCATCTTGGTTGCTTTATTTTCACAACCAAATTAGATGATC ACCACCCTAATAGCCCTCCGCCAACCAAGAAACGCAAAAAAGTCTCTCCTCTTGCTCCCATCTCTTCTTCTCCTTCTCGCCTAAAATCCCACAAAGCTCT ATCTTCCTCTTGGTCCTATCTCAAAAGCATTTTCTCTTCTAAATCGTCCAAAACTCAAACTCAATCTGGAACTCCGACTCTAACCTCAGCAAGATCATCA CAGCAATCCATAGTCCCCACGATTCCGCCTGAAACTCACCTGCCCGAGCTTCCACCTCGGAAAAAGTCAAGTGGGTCTTGCGAGGAATCCGATATCTCAA CAGATCACCATTTCTTTCCTTTAAGAAATGATATCTTTCCATGCACTGCTTGTGGTGAGATTTTCCAAAAACCTCAGCTTCTTGAACAACATCAAGCTAC CAAGCATGCTGTCACACAGCTTCTAGATGGCGATTCAGGCAAGAATATAGTCCATATCATATTTAAAACCGGGTGGTCATGTAAAGAGAAGAGCCCAGAA ATCCATAGAATTTTGAAGATCCATAATAGTCCAAAGATACTGTCAAGATTTGAAGAGTACAGGGAGTTTGTCAGAGCCAAAGCTGCAAGAAACAGTAAGA GAGGAGACGAGAGGTGCATTGCTGATGGTAACGAGCTCTTGAGGTTTTACTGTTCAACCTTTATGTGTGATTTAGGACTGAATGAGGATTCTAGCATTTG TAACCAGCAATATTGCAGTGTCTGTGGGATAATCAAGTCTGGTTTCTCACCCAAGATGGACGGAATTTCTACACTATCTACTAGTTGGAGAGCACACATG GCGATACCTGAGGAGATTGAAGAGGAGTTCAAGTTCATGAATGTGAAACGCGCTATGCTAGTTTGCCGGGTCGTCGCGGGTCGGGTCGGGTGCGACCTGG AAGAGGATGTAGACAAGCAGGATGGCGGGTCTGATTCTGTCCTGGGAAGAGGTGGCAGTGGGGTCCACACCAGGTTGGATGAGGAGGAGCTGTTGGTGTT TAATCCAAGGGCTGTGCTTCCTTGCTTTGTGATTGTATATACTGTGTGA
AA sequence Show only first row Show all	>Potri.009G043900.1 pacid=42772100 polypeptide=Potri.009G043900.1.p locus=Potri.009G043900 ID=Potri.009G043900.1.v4.1 annot-version=v4.1 MAPDIGSVFNKFLSLFVLLLHLGCFIFTTKLDDHHPNSPPPTKKRKKVSPLAPISSSPSRLKSHKALSSSWSYLKSIFSSKSSKTQTQSGTPTLTSARSS QQSIVPTIPPETHLPELPPRKKSSGSCEESDISTDHHFFPLRNDIFPCTACGEIFQKPQLLEQHQATKHAVTQLLDGDSGKNIVHIIFKTGWSCKEKSPE IHRILKIHNSPKILSRFEEYREFVRAKAARNSKRGDERCIADGNELLRFYCSTFMCDLGLNEDSSICNQQYCSVCGIIKSGFSPKMDGISTLSTSWRAHM AIPEEIEEEFKFMNVKRAMLVCRVVAGRVGCDLEEDVDKQDGGSDSVLGRGGSGVHTRLDEEELLVFNPRAVLPCFVIVYTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.009G043900 [exp]	0	1
AT3G14840			Leucine-rich repeat transmembr...		Potri.019G008900 [exp]	5.65	0.8624
AT4G08790			Nitrilase/cyanide hydratase an...		Potri.010G214600 [exp]	8.77	0.8177
AT1G07650			Leucine-rich repeat transmembr...		Potri.019G009601 [exp]	27.56	0.7864
AT5G01950			Leucine-rich repeat protein ki...		Potri.016G140200 [exp]	28.98	0.8253
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Potri.004G175000 [exp]	30.29	0.8015	UBC.11
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221500 [exp]	59.17	0.7910
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.003G198401 [exp]	61.92	0.7949
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Potri.016G031100 [exp]	64.48	0.7586
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.017G141300 [exp]	66.69	0.7776
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Potri.014G137000 [exp]	70.82	0.7837

Compare expression of checked genes

Potri.009G043900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.