Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29690 808 / 0 ATHANSYNAB, ASA2 anthranilate synthase 2 (.1) AT5G05730 783 / 0 JDL1, WEI2, TRP5, AMT1, ASA1 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) AT3G55870 665 / 0 ADC synthase superfamily protein (.1) AT2G28880 145 / 3e-36 ADCS, EMB1997 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G190600 [exp] 805 / 0 AT5G05730 835 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Potri.001G250300 [exp] 272 / 2e-88 AT2G29690 187 / 2e-56 anthranilate synthase 2 (.1) Potri.008G066600 [exp] 157 / 1e-45 AT3G55870 213 / 3e-68 ADC synthase superfamily protein (.1) Potri.010G221500 [exp] 142 / 3e-35 AT2G28880 1016 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014830 [exp] 879 / 0 AT2G29690 875 / 0.0 anthranilate synthase 2 (.1) Lus10016945 [exp] 874 / 0 AT2G29690 872 / 0.0 anthranilate synthase 2 (.1) Lus10014842 [exp] 764 / 0 AT5G05730 864 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10009888 [exp] 664 / 0 AT5G05730 755 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10036525 [exp] 134 / 1e-32 AT2G28880 1026 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10041403 [exp] 128 / 1e-30 AT2G28880 1078 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10023622 [exp] 56 / 1e-07 AT1G74710 623 / 0.0 SALICYLIC ACID INDUCTION DEFICIENT 2, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, ADC synthase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00425 [poplar] [flax] Chorismate_bind chorismate binding enzyme PF04715 [poplar] [flax] Anth_synt_I_N Anthranilate synthase component I, N terminal region
Representative CDS sequence Show only first row Show all	>Potri.009G044300.7 pacid=42772796 polypeptide=Potri.009G044300.7.p locus=Potri.009G044300 ID=Potri.009G044300.7.v4.1 annot-version=v4.1 ATGTGCGAAGTCTCTCAGTTTCCCTTTTCTCTCCCTAACAAATTCTCTTTGAAGACCATGGACAAAACCCTAGCCGTCACTCATCGTCTGCTTCCGCTAA GTTTCCGCTTGCCTGCAGCTTCCTCTGTTAATTTCAACGTTAGACTTTCAAGGTCAAGCTCAAGGTCTCTTGATCTCGTTGGTTCAAGATCGCATGGCTG TACTCTAAAATGCTCAGCTTCAACACTTGATAACCAAGTAGCAAGATTTCAAGAAGCTTCAAAGAATGGGAATTTAATTCCTCTATACCGATATATATTC TCAGATCACCTAACTCCAGTGCTTGCTTACCGATGTCTGGTTAGGGAAGATGATAGAGATGCTCCAAGCTTTTTGTTTGAATCAGTTGAGCCTGGATTGG ATGCTTCCACAATTGGGCGATATAGTGTCGTAGGAGCTCAACCAAGAATGGAGATTGTAGCTAAAGAGAACATGGTTACAATAATGGACCATTATGAAGG TCGTCGGATGGAGGAGATTGTGGAGGATCCAATGGAGGTTCCTAGAAAAATTATGGAGGGCTGGGAACCTCAACTTATTGACGAGCTTCCAGAAGCATTT TGTGGTGGATGGGTAGGCTATTTCTCATATGACACAGTGCGGTATGTAGAGAAGAAAAAGCTGCCTTTCTCTGGTGCTCCACCTGATGATAGGAATCTCC CTGATGTCCATTTAGGCCTTTATGATGATGTGATTGTATTTGATCACGTGGAAAAGAAAGCTTGTGTGATTCACTGGGTGCAATTAGACCGATTTTCTTC TGTCAAGGAGGCCTATGAGGATGGAATGAATCGACTGGAAAATATCTTATCAAGAGTGCATGATATTGCTCCACCAAGGCTACCTGCAGGTTCAATAAAG TTGTTCACTCGTCTTTTTGGCCCTAAATTGGAGAATTCAAGCATGACGAGTGAAGAATACAAGGATGCAGTGTTACAGGCAAAGGACCATATTTTGGCTG GTGATATTTTCCAGATTGTATTAAGTCAGCGTTTTGAACGTCGGACATTTGCAGATCCTTTTGAAATTTACAGAGCTTTGAGGGTCGTCAATCCAAGTCC ATACATGACATATTTACAAGCTAGAGGATGTATACTGGTTGCTTCTAGTCCTGAAATTCTTACACGTGTGAAGAAGGAGAAGATTACAAACCGACCCCTT GCTGGGACTGTTAGGAGAGGAAAGACCCCTAAAGAAGATCTAATGTTGGAAAAGGAGCTTTTGAATGATGAAAAGCAATGTGCAGAGCACATTATGCTTG TTGACTTGGGGAGGAATGATGTGGGCAAGGTCTCCAAACCTGGTTCTGTGAAAGTTGAAAAGCTCATGAATATTGAACGATATTCCCATGTTATGCACAT CAGCTCAACAGTCACTGGAGAGTTGCTTGATAATCTAACTAGATGGGATGTGTTGCGTGCTGCACTGCCTGTTGGTACTGTGAGCGGAGCACCAAAGGTG AAAGCCATGGAATTGATCGATCAGCTGGAAGTGACCAGACGTGGGCCTTACAGCGGTGGATTTGGAGGCATTTCATTTTCCGGTGACATGGACATCGCCC TTGCTCTTAGGACTATTGTCTTCCCCACCAGTACTCGTTATGATACAATGTATTCATACAAGGACGTGAACACTCGTCGAGAATGGGTAGCTCACCTCCA AGCTGGGGCTGGAATTGTGGCTGACAGTGATCCTGCAGACGAGCAGAGAGAGTGTGAGAACAAAGCAGCCGCACTTGCTCGTGCCATTGATCTTGCAGAG TCAGCATTTCTCAAGAAATGA
AA sequence Show only first row Show all	>Potri.009G044300.7 pacid=42772796 polypeptide=Potri.009G044300.7.p locus=Potri.009G044300 ID=Potri.009G044300.7.v4.1 annot-version=v4.1 MCEVSQFPFSLPNKFSLKTMDKTLAVTHRLLPLSFRLPAASSVNFNVRLSRSSSRSLDLVGSRSHGCTLKCSASTLDNQVARFQEASKNGNLIPLYRYIF SDHLTPVLAYRCLVREDDRDAPSFLFESVEPGLDASTIGRYSVVGAQPRMEIVAKENMVTIMDHYEGRRMEEIVEDPMEVPRKIMEGWEPQLIDELPEAF CGGWVGYFSYDTVRYVEKKKLPFSGAPPDDRNLPDVHLGLYDDVIVFDHVEKKACVIHWVQLDRFSSVKEAYEDGMNRLENILSRVHDIAPPRLPAGSIK LFTRLFGPKLENSSMTSEEYKDAVLQAKDHILAGDIFQIVLSQRFERRTFADPFEIYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKEKITNRPL AGTVRRGKTPKEDLMLEKELLNDEKQCAEHIMLVDLGRNDVGKVSKPGSVKVEKLMNIERYSHVMHISSTVTGELLDNLTRWDVLRAALPVGTVSGAPKV KAMELIDQLEVTRRGPYSGGFGGISFSGDMDIALALRTIVFPTSTRYDTMYSYKDVNTRREWVAHLQAGAGIVADSDPADEQRECENKAAALARAIDLAE SAFLKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Potri.009G044300 [exp]	0	1
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Potri.004G069400 [exp]	1.00	0.8873
AT2G27775			unknown protein		Potri.009G148400 [exp]	1.73	0.8511
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065600 [exp]	2.82	0.8852	Pt-LOS1.2
AT2G16780		MSI02, NFC2, NF...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.009G135100 [exp]	4.89	0.8361	NFC903,Pt-MSI2.1
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G000500 [exp]	6.32	0.8194
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Potri.006G267500 [exp]	6.70	0.8304	Pt-EIF3.6
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.002G138300 [exp]	8.71	0.8037
AT2G33840			Tyrosyl-tRNA synthetase, class...		Potri.010G248900 [exp]	10.09	0.8045
AT3G26050			TPX2 (targeting protein for Xk...		Potri.008G180900 [exp]	13.85	0.8229
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Potri.007G001500 [exp]	13.96	0.7749

Compare expression of checked genes

Potri.009G044300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.