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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT2G29730	487 / 3e-170	UGT71D1	UDP-glucosyl transferase 71D1 (.1)
AT1G07250	487 / 6e-170	UGT71C4	UDP-glucosyl transferase 71C4 (.1)
AT1G07240	483 / 3e-168	UGT71C5	UDP-glucosyl transferase 71C5 (.1)
AT1G07260	475 / 3e-165	UGT71C3	UDP-glucosyl transferase 71C3 (.1)
AT2G29710	473 / 2e-164		UDP-Glycosyltransferase superfamily protein (.1)
AT2G29740	452 / 2e-156	UGT71C2	UDP-glucosyl transferase 71C2 (.1)
AT2G29750	447 / 4e-154	UGT71C1	UDP-glucosyl transferase 71C1 (.1)
AT3G21780	413 / 4e-141	UGT71B6	UDP-glucosyl transferase 71B6 (.1)
AT3G21760	399 / 2e-135	HYR1	HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1)
AT3G21790	399 / 3e-135		UDP-Glycosyltransferase superfamily protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.016G015800 [exp]	498 / 9e-175	AT1G07250	395 / 3e-134	UDP-glucosyl transferase 71C4 (.1)
Potri.016G014500 [exp]	498 / 3e-174	AT1G07250	394 / 3e-133	UDP-glucosyl transferase 71C4 (.1)
Potri.016G015700 [exp]	496 / 2e-173	AT3G21760	354 / 6e-118	HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1)
Potri.016G016000 [exp]	457 / 4e-158	AT3G21750	456 / 6e-158	UDP-glucosyl transferase 71B1 (.1)
Potri.016G017300 [exp]	447 / 4e-154	AT3G21780	477 / 5e-166	UDP-glucosyl transferase 71B6 (.1)
Potri.016G017400 [exp]	446 / 5e-154	AT3G21790	474 / 9e-165	UDP-Glycosyltransferase superfamily protein (.1)
Potri.016G017232 [exp]	446 / 1e-153	AT3G21760	500 / 7e-175	HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1)
Potri.016G017100 [exp]	444 / 6e-153	AT3G21750	471 / 1e-163	UDP-glucosyl transferase 71B1 (.1)
Potri.006G010000 [exp]	441 / 8e-152	AT1G07250	375 / 3e-126	UDP-glucosyl transferase 71C4 (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10036087 [exp]	419 / 2e-143	AT3G21790	455 / 3e-157	UDP-Glycosyltransferase superfamily protein (.1)
Lus10026795 [exp]	416 / 4e-142	AT3G21750	448 / 5e-155	UDP-glucosyl transferase 71B1 (.1)
Lus10039037 [exp]	408 / 9e-139	AT1G07250	378 / 8e-127	UDP-glucosyl transferase 71C4 (.1)
Lus10026793 [exp]	379 / 2e-127	AT3G21780	407 / 4e-138	UDP-glucosyl transferase 71B6 (.1)
Lus10036086 [exp]	369 / 1e-123	AT3G21760	431 / 2e-147	HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1)
Lus10010476 [exp]	362 / 1e-120	AT1G07250	342 / 7e-113	UDP-glucosyl transferase 71C4 (.1)
Lus10003805 [exp]	353 / 4e-117	AT1G07250	332 / 5e-109	UDP-glucosyl transferase 71C4 (.1)
Lus10036088 [exp]	345 / 5e-114	AT3G21760	377 / 3e-126	HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1)
Lus10039302 [exp]	285 / 9e-91	AT3G16520	393 / 2e-133	UDP-glucosyl transferase 88A1 (.1.2.3)
Lus10039301 [exp]	281 / 2e-89	AT3G16520	481 / 9e-168	UDP-glucosyl transferase 88A1 (.1.2.3)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0113 [poplar] [flax]	GT-B	PF00201 [poplar] [flax]	UDPGT	UDP-glucoronosyl and UDP-glucosyl transferase

Representative CDS sequence

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>Potri.009G044600.1 pacid=42771656 polypeptide=Potri.009G044600.1.p locus=Potri.009G044600 ID=Potri.009G044600.1.v4.1 annot-version=v4.1

ATGAAGCAAGAAGAGCTGATTTTTGTTCCAGGCCCCGGTATCGGTCACTTAGCATCAGGCCTTGAATTAGCAAAGCGCCTGCTCGACCATGATGATCGAT

TATCAATCACAATACTTGTTATGAACATGCCCTTTACTCCATCTATTAATTCATACACCAGATCACTCACTGCATCACAACCCCGCATCAAACTCGTTGA

TCTTCCCGAAGTGGATCCTCCCCCATCAGAGCTTTTAACGAAATCCCCAGAAGCTTATATCTGTGATTTCATTGAAAGTTACATACCCCATGTCAAAACT

ACTGTCACAGATATTATATCATCCCTGTCTAACTCGGATGTCCGAGTTGCCGGGTTTATTCTTGATTTCTTTTGCGTGTCCATGATTGACATTGCAAATG

AATTCAGTCTCCCTCCTTATATCTTCATAACCTCCAACGCAGGATTCTTGGGTCTTATGCTAAACCTACCCAAACGCCATGATGAAATCAGCGAGGTGAT

GCAAATGTCTGATCCTGATTCGTTAATACCAGGTTTTTTCAATCCTGTTCCAGCACGAGTCTTGCCTGATGCTGTATTTAATAAACATGGTGGTTATGCT

GCTTATGTTAAGGTTGCTCAAAGGTTCAAGGATGGAAAAGGTATAATCGTGAACACATTTGCTGAGCTGGAGCCTTTTGTGCTCAGGTCCTTCTCTGATG

ATCACCGAATCCCTCCAGTTTACCCTGTTGGGCCAGTGCTACACCTAAAGGGTCAGCCTCACCCTGAAATAAACCAGGATCAGTTGGACAAAATCATGAA

ATGGCTTGATGAACAGCCTCAATCATCTGTGGTGTTTCTATGCTTCGGAAACTTTGGGAGCTTTAGCCCCCTACAAGTGAAAGAAATAGCACTTGGCATC

GAGCAAAGTGGGTTCAAATTCCTGTGGTCCATGCGTTTTCCACGCTCTCCGTCTAATCAGTTCATGAATCCTGAAGATGTGTTACCAGAAGGATTCTTGG

AACGCATAGAAGGACGAGGAATTATGTGTGGATGGGCACCGCAGGTTGAAGTCCTAGCTCACAAGGCAATAGGAGGGTTCGTGTCTCATTGTGGGTGGAA

CTCCATCTTGGAGAGCTTGTGGTACGGTGTTCCTATCGTTACATTGCCTATATATGCTGAACAGCAGCTTAATGCATTTAGGATGGTGAAGGAATTGGGA

CTGTCAGTGGAGCTGAAACTGGATTACAGGGTAGGTGGTGATCTTGTGACTGCAGATGAGATAGCAAAATCTGTAATATGTGTTATGCAAAGTGATAGTG

AGGTGAGGAAGAAGGTGAAAGAAATGAGCGAGAAAGGCAGGAAGGCTGTGATGGATGGTGGATCTTCTTTCACTTCTATCACACAACTCATCCAGGATAT

AACAGGAAACAACTGA

AA sequence

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>Potri.009G044600.1 pacid=42771656 polypeptide=Potri.009G044600.1.p locus=Potri.009G044600 ID=Potri.009G044600.1.v4.1 annot-version=v4.1

MKQEELIFVPGPGIGHLASGLELAKRLLDHDDRLSITILVMNMPFTPSINSYTRSLTASQPRIKLVDLPEVDPPPSELLTKSPEAYICDFIESYIPHVKT

TVTDIISSLSNSDVRVAGFILDFFCVSMIDIANEFSLPPYIFITSNAGFLGLMLNLPKRHDEISEVMQMSDPDSLIPGFFNPVPARVLPDAVFNKHGGYA

AYVKVAQRFKDGKGIIVNTFAELEPFVLRSFSDDHRIPPVYPVGPVLHLKGQPHPEINQDQLDKIMKWLDEQPQSSVVFLCFGNFGSFSPLQVKEIALGI

EQSGFKFLWSMRFPRSPSNQFMNPEDVLPEGFLERIEGRGIMCGWAPQVEVLAHKAIGGFVSHCGWNSILESLWYGVPIVTLPIYAEQQLNAFRMVKELG

LSVELKLDYRVGGDLVTADEIAKSVICVMQSDSEVRKKVKEMSEKGRKAVMDGGSSFTSITQLIQDITGNN

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29730		UGT71D1	UDP-glucosyl transferase 71D1 ...		Potri.009G044600 [exp]	0	1
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Potri.003G097300 [exp]	50.75	0.6815	Pt-XTR4.1

Potri.009G044600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.009G044600 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.009G044600 coexpression network