Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29760 1013 / 0 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 580 / 0 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 552 / 0 SLO1 SLOW GROWTH 1 (.1) AT4G14820 551 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 537 / 2e-180 unknown protein AT3G12770 527 / 8e-179 MEF22 mitochondrial editing factor 22 (.1) AT5G48910 520 / 1e-176 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G08820 514 / 8e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 517 / 3e-173 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 499 / 1e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G031600 [exp] 656 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 645 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086200 [exp] 591 / 0 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 588 / 0 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 586 / 0 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 568 / 0 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083700 [exp] 566 / 0 AT3G22690 1050 / 0.0 unknown protein Potri.001G019500 [exp] 566 / 0 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.006G245300 [exp] 548 / 0 AT3G22690 570 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040680 [exp] 1005 / 0 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 1003 / 0 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 585 / 0 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 572 / 0 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 566 / 0 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000706 [exp] 530 / 6e-178 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10017446 [exp] 530 / 6e-178 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010909 [exp] 523 / 3e-177 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 526 / 3e-176 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10031423 [exp] 520 / 3e-176 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.009G044700.1 pacid=42771320 polypeptide=Potri.009G044700.1.p locus=Potri.009G044700 ID=Potri.009G044700.1.v4.1 annot-version=v4.1 ATGGCAACCCTAGGGAACCCTCTTGCCTCTGTCCCAATTAGCTCAAACCCCACCATCTTAACTGCCAATAACGAACAGAAAAGCAATCCCTCCACAGTCC CAATACTCATTGACAAATGTGCCAACAAAAAACACCTGAAACAACTCCATGCTCATATGCTACGCACTGGTCTCTTCTTCGACCCTCCATCGGCTACCAA GCTCTTCACTGCATGTGCTTTGTCCTCTCCCTCGAGCCTCGATTATGCTTGCAAGGTGTTCGACCAAATTCCCCGACCAAATCTCTACACTTGGAACACC CTCATTCGTGCTTTTGCTTCAAGCCCCAAACCCATCCAAGGCCTCTTGGTATTTATCCAGATGCTTCATGAGAGCCAACGTTTTCCTAACAGTTACACTT TCCCTTTTGTTATTAAGGCTGCCACGGAGGTTTCTAGTTTACTTGCTGGACAAGCTATTCATGGAATGGTTATGAAGGCATCGTTTGGTTCGGATTTGTT TATTTCGAACTCACTTATTCATTTCTATTCCTCATTGGGGGATTTGGATTCGGCTTATTTAGTTTTTTCGAAGATTGTTGAGAAAGATATTGTATCATGG AATTCAATGATATCGGGGTTTGTGCAAGGGGGTAGCCCTGAGGAGGCATTGCAGTTGTTTAAAAGAATGAAGATGGAGAATGCGAGGCCCAATCGTGTGA CAATGGTGGGAGTTTTATCAGCTTGTGCAAAGAGGATAGATTTGGAATTTGGTAGATGGGCTTGCGATTACATTGAGAGGAATGGGATTGATATAAATTT GATTTTGAGTAATGCAATGCTTGATATGTATGTGAAATGTGGGAGCCTTGAAGATGCTAGAAGATTGTTTGATAAGATGGAGGAGAAAGATATTGTTTCG TGGACAACTATGATTGATGGGTATGCAAAAGTGGGTGATTATGATGCGGCTAGGAGGGTTTTTGATGTCATGCCCAGGGAAGATATTACTGCCTGGAATG CATTAATATCTTCTTATCAACAGAATGGGAAGCCAAAAGAGGCACTAGCCATTTTCCGTGAATTACAGCTTAATAAGAACACAAAACCAAACGAAGTTAC ACTTGCAAGTACCTTGGCAGCATGTGCTCAGCTGGGAGCAATGGATTTAGGTGGGTGGATTCATGTGTACATAAAGAAGCAAGGCATTAAGTTAAACTTC CATATCACAACCTCGCTTATTGACATGTATTCTAAGTGTGGCCATCTAGAGAAGGCACTTGAGGTGTTTTATTCTGTGGAAAGGAGAGATGTGTTTGTAT GGAGTGCCATGATTGCTGGGTTGGCAATGCATGGGCATGGGAGAGCTGCTATTGATTTGTTCTCAAAGATGCAAGAAACTAAGGTAAAGCCCAATGCTGT GACATTTACCAATTTACTGTGCGCTTGTAGTCACTCGGGACTAGTGGATGAGGGCAGGTTGTTTTTCAATCAAATGAGGCCAGTTTATGGTGTTGTGCCT GGTAGCAAACATTATGCTTGTATGGTTGATATTCTTGGTCGTGCAGGCTGCCTTGAAGAAGCTGTTGAATTAATAGAAAAAATGCCAATAGTCCCAAGTG CTTCTGTGTGGGGTGCTCTACTTGGAGCATGCAGAATTTATGGAAATGTTGAGCTCGCTGAAATGGCTTGTAGTCGTTTGCTTGAGACAGACTCCAATAA TCATGGAGCTTATGTGCTCTTATCCAATATATATGCCAAAGCAGGCAAATGGGACTGTGTTTCTAGATTAAGGCAGCACATGAAAGTTTCTGGGTTGGAG AAGGAACCAGGTTGTAGCTCGATTGAGGTTAATGGCATCATTCATGAGTTTCTCGTTGGAGATAACTCTCACCCTCTCTCCACGGAAATCTACTCTAAGT TGGACGAGACTGTAGCTAGAATAAAATCAACTGGTTATGTGTCTGACGAGTCCCACCTTCTACAATTTGTTGAAGAAGAATACATGAAGGAGCATGCCCT TAACCTTCACAGTGAAAAATTGGCAATTGCCTATGGGCTTATTAGGATGGAACCATCACAACCAATTAGGATAGTGAAAAATCTTCGTGTTTGTGGAGAC TGTCATTCAGTTGCTAAGATCATATCTAAACTTTATAATAGAGATATACTATTGAGAGATCGGTATCGGTTCCATCATTTCAGTGGAGGGAATTGCTCGT GTATGGATTACTGGTAA
AA sequence Show only first row Show all	>Potri.009G044700.1 pacid=42771320 polypeptide=Potri.009G044700.1.p locus=Potri.009G044700 ID=Potri.009G044700.1.v4.1 annot-version=v4.1 MATLGNPLASVPISSNPTILTANNEQKSNPSTVPILIDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNT LIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSW NSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVS WTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNF HITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVP GSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLE KEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDETVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRMEPSQPIRIVKNLRVCGD CHSVAKIISKLYNRDILLRDRYRFHHFSGGNCSCMDYW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.009G044700 [exp]	0	1
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	5.83	0.9168
AT1G52640			Pentatricopeptide repeat (PPR)...		Potri.004G102700 [exp]	7.48	0.9110
AT5G14080			Tetratricopeptide repeat (TPR)...		Potri.001G326800 [exp]	8.48	0.8945
AT2G33760			Pentatricopeptide repeat (PPR)...		Potri.004G043400 [exp]	8.66	0.9043
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.001G019500 [exp]	11.31	0.9042
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G245100 [exp]	11.61	0.9042
					Potri.002G246900 [exp]	11.83	0.8839
AT1G08610			Pentatricopeptide repeat (PPR)...		Potri.019G019200 [exp]	14.49	0.8825
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.003G155600 [exp]	15.29	0.8692
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G244900 [exp]	15.68	0.9021

Compare expression of checked genes

Potri.009G044700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.