Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01260 149 / 6e-42 Carbohydrate-binding-like fold (.1.2) AT5G26570 52 / 4e-07 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114500 [exp] 176 / 2e-50 AT5G01260 169 / 1e-48 Carbohydrate-binding-like fold (.1.2) Potri.006G099200 [exp] 167 / 6e-47 AT5G01260 156 / 8e-44 Carbohydrate-binding-like fold (.1.2) Potri.002G234500 [exp] 46 / 3e-05 AT5G26570 1561 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.014G147900 [exp] 45 / 8e-05 AT5G26570 1509 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018226 [exp] 164 / 1e-46 AT5G01260 124 / 3e-32 Carbohydrate-binding-like fold (.1.2) Lus10002495 [exp] 150 / 9e-41 AT5G01260 152 / 3e-42 Carbohydrate-binding-like fold (.1.2) Lus10004826 [exp] 149 / 4e-40 AT5G01260 160 / 1e-44 Carbohydrate-binding-like fold (.1.2) Lus10035528 [exp] 150 / 2e-39 AT2G40070 280 / 4e-83 unknown protein Lus10027767 [exp] 145 / 6e-38 AT2G40070 288 / 5e-86 unknown protein Lus10037434 [exp] 49 / 8e-06 AT5G26570 1508 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10041275 [exp] 45 / 9e-05 AT5G26570 1353 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10031298 [exp] 42 / 0.0008 AT1G07110 1129 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10031299 [exp] 42 / 0.0009 AT1G07110 1128 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [poplar] [flax] GHD PF00686 [poplar] [flax] CBM_20 Starch binding domain
Representative CDS sequence Show only first row Show all	>Potri.009G044800.1 pacid=42772203 polypeptide=Potri.009G044800.1.p locus=Potri.009G044800 ID=Potri.009G044800.1.v4.1 annot-version=v4.1 ATGCCACATGTCAAAAACCCACAACTTGATGTTAGATCCGAAGCCTTCTCATTCCTTGGTCTTCCCAAAGTGTATATAATACACCCCGCCAAGTTCCTCA CTCTACAGATACTAAACGTCTCTTCTAGTTCAACAAGACCCAAGCTTTGGCCTTTTTGTTTGTTAGCAATGGAAACTTTAACTGGCTTGTACACTAAGGT CTTCACAAAAAACAATAACAAAACTTTATCACCATCAAGATCAGCTCAACTGGGTCGATCTGATATTGGCTTTTCTCCATCTCCAAGTCTAAAGAGAGCA CATTTTGATCATTTGGCTTTGTGTCGACGCAGAGATGCTCCATTGCTGGTCATGAAATCCCATCCTGCATCTAATGCAGAGGTGTTGACTGGCTTCGAGA CTGCAGTGTCCGGGAACCAAAAAATAACACCAGAAAAAACTGTTCACGTGAAGTTCCAGTTGCAGAAGGAGTGCATGTTCGGTGAGCAATTTCTCCTGGT TGGGGAAGACCCAATGATTGGTATGTGGGATCCATCAAATGCCATACCACTCGACTGGTCAGAGGGACACACATGGAGTGTTGAGCTGGATGTGCGCATT GATTTGACGATGCAATACAAGTTTATTCTTAAAAGAAGCACGGGAGAAATTCTTTGGCAACCTGGTCCAGACAGAATATTCAAGACATGGGAAAGCAGTA GCAGTGTAGTGATTGCAGAGGATTGGGAAAATGCTGGAGCTCAAAAAATTATGGAGGAGCAAATGATCAATACTCCAGATTTGGAGCCTGTTGGTGCTGG AAATGTTTCTCTTCAGGGGGGAGAAGTTATGTCTGATGTCAACAAGGATTTAATGCTTTCAGGGCACATTGCCTGTGCAGAAGATAAATCAAATGGTAAG TATGAGGTTGTCAATGGGATTGCCTATCCAGCGGAGGGACATATAATTAATGCAGACATAAAACTTGAGTCAGGGGAATCTTTTGGTAGCAGAAAAGAGG TGTCAGTGCCAGCAGACAAGAATAACTGTGCAACTCCAACTTGCAAGAACCCAGTAACCATGGAGGATGAAGAAACCTTGTTGACTTGTGAACAACGCAC TGTTCTTGTACCTGGTTTGAAATCCTCCACAAGCAGTCTCTAG
AA sequence Show only first row Show all	>Potri.009G044800.1 pacid=42772203 polypeptide=Potri.009G044800.1.p locus=Potri.009G044800 ID=Potri.009G044800.1.v4.1 annot-version=v4.1 MPHVKNPQLDVRSEAFSFLGLPKVYIIHPAKFLTLQILNVSSSSTRPKLWPFCLLAMETLTGLYTKVFTKNNNKTLSPSRSAQLGRSDIGFSPSPSLKRA HFDHLALCRRRDAPLLVMKSHPASNAEVLTGFETAVSGNQKITPEKTVHVKFQLQKECMFGEQFLLVGEDPMIGMWDPSNAIPLDWSEGHTWSVELDVRI DLTMQYKFILKRSTGEILWQPGPDRIFKTWESSSSVVIAEDWENAGAQKIMEEQMINTPDLEPVGAGNVSLQGGEVMSDVNKDLMLSGHIACAEDKSNGK YEVVNGIAYPAEGHIINADIKLESGESFGSRKEVSVPADKNNCATPTCKNPVTMEDEETLLTCEQRTVLVPGLKSSTSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01260			Carbohydrate-binding-like fold...		Potri.009G044800 [exp]	0	1
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G234300 [exp]	2.82	0.8808
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.006G215866 [exp]	4.47	0.8727
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.005G225300 [exp]	6.48	0.8537
AT5G05160		REDUCED IN LATE...	REDUCED IN LATERAL GROWTH1, Le...		Potri.001G209700 [exp]	7.14	0.8447
AT1G02420			Pentatricopeptide repeat (PPR)...		Potri.007G079400 [exp]	11.83	0.8435
AT5G06350			ARM repeat superfamily protein...		Potri.011G095700 [exp]	13.60	0.8723
AT1G79060			unknown protein		Potri.007G065200 [exp]	13.74	0.8654
AT2G03360			Glycosyltransferase family 61 ...		Potri.010G162200 [exp]	13.85	0.8651
					Potri.002G220667 [exp]	15.87	0.8625
					Potri.002G208200 [exp]	20.19	0.8581

Compare expression of checked genes

Potri.009G044800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.