Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47120 275 / 1e-90 C3HZnF RNA recognition motif (RRM)-containing protein (.1) AT4G39260 64 / 7e-13 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT5G19960 67 / 4e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G50250 66 / 7e-12 CP31B chloroplast RNA-binding protein 31B (.1) AT5G64200 65 / 1e-11 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT1G74230 64 / 2e-11 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT2G21660 62 / 2e-11 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT4G24770 64 / 3e-11 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT3G26420 63 / 3e-11 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT3G23830 61 / 4e-11 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208500 [exp] 66 / 6e-13 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G155300 [exp] 64 / 3e-12 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G116400 [exp] 63 / 1e-11 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.001G126400 [exp] 65 / 3e-11 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.018G074100 [exp] 64 / 3e-11 AT5G19960 202 / 3e-62 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G095800 [exp] 63 / 3e-11 AT5G64200 204 / 5e-65 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.003G107200 [exp] 65 / 4e-11 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.005G165400 [exp] 63 / 4e-11 AT5G64200 202 / 2e-63 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.015G057400 [exp] 63 / 4e-11 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018227 [exp] 375 / 6e-130 AT3G47120 298 / 1e-99 RNA recognition motif (RRM)-containing protein (.1) Lus10043158 [exp] 64 / 2e-12 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10014814 [exp] 66 / 1e-11 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10032591 [exp] 61 / 3e-11 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10017923 [exp] 65 / 4e-11 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10017852 [exp] 63 / 4e-11 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10016639 [exp] 61 / 4e-11 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10028714 [exp] 64 / 5e-11 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1) Lus10038932 [exp] 64 / 6e-11 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3) Lus10022551 [exp] 61 / 6e-11 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.009G044900.2 pacid=42771302 polypeptide=Potri.009G044900.2.p locus=Potri.009G044900 ID=Potri.009G044900.2.v4.1 annot-version=v4.1 ATGAATCCATTGACGCTGGTGAAACGAATCCAAAACATAAACTCAAAAGAAGCTGCGTTAGGGATTTCAGAGGAAGCATCATGGCATGCTAAGTACAAAG ACTCTGCTTATGTCTTTGTGGGTGGCATTCCTTTCGATCTCACTGAAGGCGATCTCCTTGCTGTCTTTGCTCAATACGGGGAGGTAGTTGATGCTAATCT AGTAAGAGACAAGGGTACTGGTAAATCAAAAGGTTTTGCATTTATTGCATACGAGGATCAGAGAAGTACAAATCTTGCTGTAGATAATCTGAATGGAGCT CAGGTTCTTGGCCGAATTATAAGGGTTGACCACGTTACTAAGTACAAGAAGAAAGAAGAAGAAGATGAAGAGACAGCGCAGCAGAAGAGGGAGGCCCGGG GGGTTTGTCATGCGTTCCAGAGAGGTGAATGTAATCGTGGAGCTGGGTGCAGATTTTCCCATGATGAGCAAAGAGCTGCAAACACAGGCTGGGGTGCTCA AGATAAAAGTTCTAGATGGGGACATGAAATGTTTGATGGTCCTAAGAAGAGTGAGGAAAGATCTAGCTATAACATGCCCTCAGAGAGCCACCCTAAACAA AATGATAGGAGGGAGGAAAAGAGATCAAGATGGCATGATGATAATGAGATTGTGCAGAAGCCAAGAGAAGATTATAACAGAAGGGAAGACAAGAAATTAA GAAGGCTCGAAGATGATGCATTTGTGCCAAAGCCAAGAGAAGATGATTATAAGAGAGATGAAAATAGATTGAAAAGGCACAAGGATATTGTACCTGAACC GAAGTTGAGAGGAGATAATTATAGAAAGGAGGAAAAAATACCGAGGAGGCATGATCGTGATGAATTTGAACCCAGGTCAAGAGAAGATGATGGTACGAGG GAAGAAAGGAGATCAAGAAGGAATGAAACAGAGTCCTATTTTAGAGAAGAGCAAGATAAGAGACGAGGGGACAAATTGTCTGCACATGGGAGGGATTCTT CCTCCAATCGTCATCGAGAAAGAGATGATCACAGGCGTAAAGCAGAGAGATAA
AA sequence Show only first row Show all	>Potri.009G044900.2 pacid=42771302 polypeptide=Potri.009G044900.2.p locus=Potri.009G044900 ID=Potri.009G044900.2.v4.1 annot-version=v4.1 MNPLTLVKRIQNINSKEAALGISEEASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDANLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNLNGA QVLGRIIRVDHVTKYKKKEEEDEETAQQKREARGVCHAFQRGECNRGAGCRFSHDEQRAANTGWGAQDKSSRWGHEMFDGPKKSEERSSYNMPSESHPKQ NDRREEKRSRWHDDNEIVQKPREDYNRREDKKLRRLEDDAFVPKPREDDYKRDENRLKRHKDIVPEPKLRGDNYRKEEKIPRRHDRDEFEPRSREDDGTR EERRSRRNETESYFREEQDKRRGDKLSAHGRDSSSNRHRERDDHRRKAER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47120	C3HZnF		RNA recognition motif (RRM)-co...		Potri.009G044900 [exp]	0	1
AT3G01160			unknown protein		Potri.005G108800 [exp]	2.44	0.8570
AT1G80930			MIF4G domain-containing protei...		Potri.016G121100 [exp]	3.46	0.8882
AT3G49601			unknown protein		Potri.006G233000 [exp]	5.74	0.8543
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Potri.018G075500 [exp]	5.91	0.8374
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Potri.002G013100 [exp]	7.34	0.7238
AT3G51650			unknown protein		Potri.016G133700 [exp]	7.74	0.8418
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Potri.003G104200 [exp]	9.16	0.8307
AT2G25320			TRAF-like family protein (.1)		Potri.018G025600 [exp]	9.53	0.8261
AT4G33740			unknown protein		Potri.009G083900 [exp]	14.38	0.8183
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Potri.008G055300 [exp]	14.83	0.8089

Compare expression of checked genes

Potri.009G044900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.