Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	VLN1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29890 1101 / 0 ATVLN1, VLN1 villin 1, villin-like 1 (.1.2.3) AT4G30160 847 / 0 ATVLN4, VLN4 villin 4 (.1.2) AT5G57320 829 / 0 VLN5 villin 5, villin, putative (.1) AT2G41740 656 / 0 ATVLN2, VLN2 villin 2 (.1) AT3G57410 644 / 0 ATVLN3, VLN3 villin 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G165300 [exp] 867 / 0 AT4G30160 1507 / 0.0 villin 4 (.1.2) Potri.018G089700 [exp] 855 / 0 AT4G30160 1464 / 0.0 villin 4 (.1.2) Potri.006G050200 [exp] 684 / 0 AT2G41740 1340 / 0.0 villin 2 (.1) Potri.016G056200 [exp] 651 / 0 AT2G41740 1248 / 0.0 villin 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005861 [exp] 1216 / 0 AT2G29890 1049 / 0.0 villin 1, villin-like 1 (.1.2.3) Lus10015333 [exp] 821 / 0 AT4G30160 1395 / 0.0 villin 4 (.1.2) Lus10035450 [exp] 687 / 0 AT2G41740 1402 / 0.0 villin 2 (.1) Lus10031066 [exp] 514 / 3e-167 AT2G41740 1320 / 0.0 villin 2 (.1) Lus10025461 [exp] 344 / 2e-104 AT4G30160 959 / 0.0 villin 4 (.1.2) Lus10015334 [exp] 95 / 5e-23 AT4G30160 132 / 3e-37 villin 4 (.1.2) Lus10015332 [exp] 50 / 3e-07 AT4G30160 100 / 4e-26 villin 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [poplar] [flax] ADF PF00626 [poplar] [flax] Gelsolin Gelsolin repeat
Representative CDS sequence Show only first row Show all	>Potri.009G045000.5 pacid=42771604 polypeptide=Potri.009G045000.5.p locus=Potri.009G045000 ID=Potri.009G045000.5.v4.1 annot-version=v4.1 ATGTCAAAGCAGATTGACTCTGTATTCGATGGCGCAGGAGCCAAACCTGGCTTGGAAATATGGTGTGTGGAGAAGCAGCTCCGGTTGGTTCCAGTTCCAA AATCTCTGCACGGCAAGTTTTATTCTGGGAATTCATATGTAGTTTTGAGTACGGTTTTGCCAAGAAGCGGCCCTCCTCAGCACGACATACATTACTGGTT GGGAAAAGATGCAAATGAGGTGGAATCGACCCTAGCATCAGACAAAGCACTAGAATTAGATTCAGCTCTAGGGTCTTGTACTGTACAGTATAGGGAAGTT CAGGGCCAAGAAACAGAGAAGTTCTTGTCATACTTTAAGCCATGTGTTATACCCATTGAAGGAGTGTTTTCTTCAGATTCTGGACAGTTAAATGGTGAAT CATACAAAATTAGCTTGTTAACATGCAAAGGGGAGCATGTTGTTTCTGTGAAAGAAGTGCCTTTTTCTCGGTCATCCTTGAACCACAATGATGTATTCAT ACTTGACACTGCATCCAAAATTTTCCTCTTTAGTGGGTGCAACTCTAGCACTCAAGAAAGGGCTAAAGCTTTGGAGGTTGTTCAGTACATCAAGGAGAAC AAGCATGGTGGAACCTGTGAAGTGGCCACTGTAGAGGATGGGAAACTTGTTGGCGATCCTGAAGTTGGTGAGTTCTGGAGTTTTTTTGGAGGATATGCTC CTATTCCTAGGGATTCACCTTGTGTTGAGAAACAATCTGATTCTCCATTCTCACAATTGTTCTGGATAACAGCACAGGCTAAGCTGTGTCCGTGTGAAGG TAGTTCGTTGAACAAAGAAATGCTAGAGACAAACAAGTGCTATATGCTTGACTGTGGTGCTGAGATTTTTGTATGGATGGGAAGAAATACCTCAATTACA GAAAGGAAGAAATCAATTTCAGTTACTGAGGATCTACTGAGAAATCAGGGAAGGTCAATGGCAACCCATTTAACTTTTCTAACTGAAGGATTAGAGACTT CCATATTTAGGTCGTATTTTAAGAATTGGCCTCAAGTGGTGGAGCCAAAGTTGTATGAAGAAGGTCGTGGAAAAGTAGCAGCAATATTTAAGCAACAGGG CTATGATGTGAAGGAACTGCCTGATGAAGAAGACTGCCAGCCATATATAAATTGCCGAGGAAAACTGAAGGTTTGGCGGATAAATGGTGAACAGCCGACC CTTATTCCTGATCCAGAGCAGACAAAGCTCTTCAGTGGAGATTGCTACATTGTTCAGTATACATATCCTGGCAATGGGAGGGATGAACATTTGTTTTATG CATGGCTTGGTCGTGACAGTGTTCTGGATGATAGAGCAGATGCTATCTCCCACATGAATGCTATAGCAGACTCAAGCAAAAGGGATCCAGTCCTGGTTCA AGTTATTCAAGACAAGGAGCCACTTCTATTTTTCTCAATTTTTCAGACAGTAATTATATTCAAGGGAGGTTTAAGTAAACGGTACAAGAACTTGATTGCG GAGAAAGGAATTTTGGATGAAACTTATGATGAACAAAAGACCGCACTTTTTCGAGTTCAAGGGATCAGTCCAGAGAACATGCAAGCCATCCAAGTTGACC AGGTTTCAAATTCCTTGAACTCCTCGTATTGTTACATCTTGCAAACTGGAACATCCATCTTCACATGGATAGGGAATCTCTCTTCTACTGTAGACCATGC TCTTCTTGACAGAATGCTGGAATTGATTAATCCAACATGGCAACCTATATCAGTGCGGGAAGGGAGTGAACCTGATATTTTTTGGAATGCCCTTGGTGGA AAAACTGAGTATCCAAGGCAAAAGGAGTTAAAACAACATGTTGAAGATCCACATCTATTTACGCTTACATGCGCTGATGGTATGCAAAATACACTTTCAA ATTTCATTCATTCTAGAGATGATGTGCTCTGTCTTGGTTCTGAATTATTACAGGTGTTAATTGCTGTCAAATTTTTTCTGATGGTGGGTTTTGGATCTTA TGCTGCTTGGTTGAATTTTGTTGCAGGCGATTTCAAGGTGAAAGAGATATACAACTTTGCGCAGGATGATTTAACCACTGAAGATGTGTTAATACTCGAC TGCCACGAGGAAATACATGTCTGGATTGGAAGCCATTCAAATGTCAAATCAAAGCAGCAAGCCATCTTGCTTGGCATGAAATTCCTTCAGACAGACCCGC TGGTTGAAGGACTATCTTCCGAGACTCCTATTTATGTCATTACAGAGGGGCGGGAGCCACTTTTCTTCACTCGCTTCTTTGAGTGGGATTCATCAAAGGC AAATATGCATGGAAACTCCTTTGAACGAAGGCTTGCTATTCTAAAAGGAAAGAAGCAAAATCTTGAAGTTCATACAAGTAAATCATGGAAAGCATCCTCT AAGGAGACAACTCCAGATGGTTTGAGAAGCAAGTCTGTTAGTTCAAATGGGAGAAATAGTACATCTCCAGTATCCAGTGCTTCAGTCACGCACTTTAATT CTTCAACCAACTGCCAAATCTCCACCCCAGCTCCAACAGCAAGAAAGCTCTTTCCTGGGTCCCCCTTTCATGACAGTGCTGGTTCTCCAAAAGCAGAGGC AGAATCCCCTTCTCAGGCTGCAGTTTTATCTCAGGTTGATGGCAATGATGCTAGTGAGAACTCAGTGATCTATCCTTATGAGCGATTGAAAGTGAATTCA AGTGATCCAGTAACGGACATTGATGTAACCAAAAGAGAGGGATACTTATGCGACGAGGAGTTTCAAGAGAAGTTTGGAATGCGGAAAAAAGCATTTTATG AGCTTCCAAAATGGAGACAGAACAAGCTGAAGATATCTCTTCATCTTTTTTAA
AA sequence Show only first row Show all	>Potri.009G045000.5 pacid=42771604 polypeptide=Potri.009G045000.5.p locus=Potri.009G045000 ID=Potri.009G045000.5.v4.1 annot-version=v4.1 MSKQIDSVFDGAGAKPGLEIWCVEKQLRLVPVPKSLHGKFYSGNSYVVLSTVLPRSGPPQHDIHYWLGKDANEVESTLASDKALELDSALGSCTVQYREV QGQETEKFLSYFKPCVIPIEGVFSSDSGQLNGESYKISLLTCKGEHVVSVKEVPFSRSSLNHNDVFILDTASKIFLFSGCNSSTQERAKALEVVQYIKEN KHGGTCEVATVEDGKLVGDPEVGEFWSFFGGYAPIPRDSPCVEKQSDSPFSQLFWITAQAKLCPCEGSSLNKEMLETNKCYMLDCGAEIFVWMGRNTSIT ERKKSISVTEDLLRNQGRSMATHLTFLTEGLETSIFRSYFKNWPQVVEPKLYEEGRGKVAAIFKQQGYDVKELPDEEDCQPYINCRGKLKVWRINGEQPT LIPDPEQTKLFSGDCYIVQYTYPGNGRDEHLFYAWLGRDSVLDDRADAISHMNAIADSSKRDPVLVQVIQDKEPLLFFSIFQTVIIFKGGLSKRYKNLIA EKGILDETYDEQKTALFRVQGISPENMQAIQVDQVSNSLNSSYCYILQTGTSIFTWIGNLSSTVDHALLDRMLELINPTWQPISVREGSEPDIFWNALGG KTEYPRQKELKQHVEDPHLFTLTCADGMQNTLSNFIHSRDDVLCLGSELLQVLIAVKFFLMVGFGSYAAWLNFVAGDFKVKEIYNFAQDDLTTEDVLILD CHEEIHVWIGSHSNVKSKQQAILLGMKFLQTDPLVEGLSSETPIYVITEGREPLFFTRFFEWDSSKANMHGNSFERRLAILKGKKQNLEVHTSKSWKASS KETTPDGLRSKSVSSNGRNSTSPVSSASVTHFNSSTNCQISTPAPTARKLFPGSPFHDSAGSPKAEAESPSQAAVLSQVDGNDASENSVIYPYERLKVNS SDPVTDIDVTKREGYLCDEEFQEKFGMRKKAFYELPKWRQNKLKISLHLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Potri.009G045000 [exp]	0	1	VLN1.1
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.006G131400 [exp]	2.00	0.8527
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Potri.002G254300 [exp]	2.82	0.8782	XIB.1
AT5G04420			Galactose oxidase/kelch repeat...		Potri.008G031200 [exp]	5.91	0.8449
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.007G047900 [exp]	7.93	0.8862
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Potri.009G113700 [exp]	8.12	0.8693	Pt-ALPHA.12
AT1G58350		ZW18	Putative serine esterase fami...		Potri.013G104400 [exp]	8.83	0.8150	Pt-ZW18.2
AT1G76620			Protein of unknown function, D...		Potri.002G001900 [exp]	9.79	0.8193
AT5G16850		ATTERT	telomerase reverse transcripta...		Potri.003G022600 [exp]	10.19	0.8080
AT3G52870			IQ calmodulin-binding motif fa...		Potri.008G023866 [exp]	11.22	0.8364
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.001G018700 [exp]	12.24	0.8282

Compare expression of checked genes

Potri.009G045000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.