Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64780 530 / 0 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G13510 528 / 0 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT4G28700 524 / 0 AMT1;4 ammonium transporter 1;4 (.1) AT3G24300 515 / 0 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT3G24290 510 / 5e-179 AMT1;5 ammonium transporter 1;5 (.1) AT2G38290 44 / 0.0002 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G023600 [exp] 538 / 0 AT1G64780 730 / 0.0 ammonium transporter 1;2 (.1) Potri.010G063500 [exp] 533 / 0 AT4G13510 671 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.002G255000 [exp] 529 / 0 AT4G13510 688 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.002G255100 [exp] 519 / 0 AT4G28700 633 / 0.0 ammonium transporter 1;4 (.1) Potri.008G173800 [exp] 518 / 0 AT4G13510 692 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.013G049925 [exp] 201 / 4e-62 AT4G13510 258 / 4e-84 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.002G047000 [exp] 68 / 4e-12 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.013G040401 [exp] 64 / 8e-11 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 62 / 3e-10 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018229 [exp] 677 / 0 AT1G64780 610 / 0.0 ammonium transporter 1;2 (.1) Lus10023705 [exp] 507 / 2e-177 AT4G13510 748 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10004403 [exp] 484 / 7e-169 AT4G13510 739 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10004760 [exp] 284 / 4e-93 AT1G64780 489 / 5e-173 ammonium transporter 1;2 (.1) Lus10040677 [exp] 249 / 2e-81 AT1G64780 225 / 6e-72 ammonium transporter 1;2 (.1) Lus10003096 [exp] 217 / 2e-68 AT3G24300 301 / 4e-101 ammonium transporter 1;3 (.1) Lus10000823 [exp] 207 / 1e-64 AT1G64780 312 / 3e-105 ammonium transporter 1;2 (.1) Lus10004761 [exp] 151 / 8e-44 AT3G24300 226 / 4e-73 ammonium transporter 1;3 (.1) Lus10024186 [exp] 67 / 8e-12 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 67 / 1e-11 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [poplar] [flax] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Potri.009G045200.1 pacid=42771849 polypeptide=Potri.009G045200.1.p locus=Potri.009G045200 ID=Potri.009G045200.1.v4.1 annot-version=v4.1 ATGGAGGTCTCATGGGAACAAAGTGTGACAGACTCTATCAATACCATTTACTTGCTCTTCTCAGCTTACTTGGTCTTTGTGATGCAACTTGGCTTTGCCA TGCTATGTGCTGGCTCAGTCAGGGCCAAGAATGCCATGAACATTATGCTTACAAATGTTGTTGATGCTGTTGTTGGGAGCATCTCTTATTACCTCTTCGG CTTTGCTTTTGCATTTGGTGATTGCACCAATTCTAACCCTTTCATAGGTACAACCTTCTTTGCTCTCAAAGATATTCCCAACACCTCTTACGACTATAGT TACTTTCTTTACCAATGGGCTTTTGCTATAGCAGTTGCTGGAATCACCAGTGGCTCAATAGCCGAAAGAACCCAATTCAGTGCTTATCTTGTTTTCTCAT TTTTCCTTTCTGGATTTGTGTACCCAATTGTGGTTCACTGGGTTTGGTCATCAAATGGTTGGCTGTCTCCTAGTTCTGATATGTTGTTCGGCTCTGGTGC TATTGACTTTGCTGGCAGTGGCGTGGTTCATTTGGTGGGAGGGATTGCTGGACTTTGGGGCTCTTTCATACAAGGTCCTCGAGTGGGCAGGTTTGATGCG TTTGGCAAGCCCGTGCCTATGCGTGGGCACAATGCAACTCTTGTGGTGCTTGGGACATTCTTGTTGTGGTTTGGCTGGTTTGGGTTTAATCCTGGTTCAT TTGGTAAGATTCTTGTCGCCTACCCCAATACAACCTATCAAGGGAACTGGACCGGTATTGGCCGGACTGCGGTAACAACTACATTGGCTGGTTCGACCGC CGGACTCACAACCCTATTTGGCCGGCGATTACTAGTAGGCCACTGGGATGCATTAGATGCTTGCAATGGATTGCTTGGTGGTTTTGTGGCCATTACTTCA GGATGTTCTGTCGTGGAGCCATGGGCCGCGATTGTATGTGGGTTTTGTGCAGCTTGGGTCTTGATTGGGCTCAACGTCTTGGCTCTAAAGCTGCAATTTG ATGACCCATTAGAGGCAACTCAGCTGCATGGTGGGTGTGGTGCTTGGGGTTTGATATTCACTGGATTATTTGCCAAAAAGGAATTTGTGATCCAAGTTTA TAATTCAGGTGAGGCGGGAGTGGTGAGACCCTATGGCCTTTTATTGGGCGGTGGATGGGGTCTGATCGGATGCCAAGTGGTTGAGTTGTTGGCAATAGTA GCCTGGGTTAGCATAACAATGGGACCAGTTTTCTTTGCACTTGATAAGCTTAAGATGTTGAGAATATCAATTGATGAAGAAGTAGCAGGCCTTGATATCT CTAGCCATGGAGGCTATGCCTATACTACGCATCCTGAAGAGAACCATCCTCGCTTCTACGCAGATTATATGCCTATCCAAGGTCGAAATCATTCATGA
AA sequence Show only first row Show all	>Potri.009G045200.1 pacid=42771849 polypeptide=Potri.009G045200.1.p locus=Potri.009G045200 ID=Potri.009G045200.1.v4.1 annot-version=v4.1 MEVSWEQSVTDSINTIYLLFSAYLVFVMQLGFAMLCAGSVRAKNAMNIMLTNVVDAVVGSISYYLFGFAFAFGDCTNSNPFIGTTFFALKDIPNTSYDYS YFLYQWAFAIAVAGITSGSIAERTQFSAYLVFSFFLSGFVYPIVVHWVWSSNGWLSPSSDMLFGSGAIDFAGSGVVHLVGGIAGLWGSFIQGPRVGRFDA FGKPVPMRGHNATLVVLGTFLLWFGWFGFNPGSFGKILVAYPNTTYQGNWTGIGRTAVTTTLAGSTAGLTTLFGRRLLVGHWDALDACNGLLGGFVAITS GCSVVEPWAAIVCGFCAAWVLIGLNVLALKLQFDDPLEATQLHGGCGAWGLIFTGLFAKKEFVIQVYNSGEAGVVRPYGLLLGGGWGLIGCQVVELLAIV AWVSITMGPVFFALDKLKMLRISIDEEVAGLDISSHGGYAYTTHPEENHPRFYADYMPIQGRNHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Potri.009G045200 [exp]	0	1	6
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.012G047700 [exp]	1.00	0.9976
AT5G46690	bHLH	bHLH071	beta HLH protein 71 (.1)		Potri.003G093200 [exp]	3.16	0.9946
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.010G245266 [exp]	5.29	0.9923
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Potri.003G065266 [exp]	10.95	0.9948
AT3G48675			Protein of unknown function (D...		Potri.006G062100 [exp]	11.09	0.9916
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.017G010700 [exp]	14.14	0.9908
AT5G02890			HXXXD-type acyl-transferase fa...		Potri.001G152500 [exp]	14.28	0.9777
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Potri.001G310600 [exp]	14.38	0.9938
AT2G18420			Gibberellin-regulated family p...		Potri.013G113400 [exp]	15.87	0.9944
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Potri.005G153600 [exp]	16.30	0.9941	Pt-CER2.1

Compare expression of checked genes

Potri.009G045200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.