Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18600 747 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 663 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT5G54910 331 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) AT2G40700 292 / 5e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G71370 278 / 4e-86 DEA(D/H)-box RNA helicase family protein (.1) AT5G05450 267 / 2e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08620 253 / 2e-76 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT5G08610 254 / 2e-74 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63630 245 / 2e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60990 233 / 3e-70 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G250700 [exp] 978 / 0 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G423300 [exp] 339 / 4e-107 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G059100 [exp] 303 / 3e-95 AT2G40700 814 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G073100 [exp] 270 / 1e-82 AT5G05450 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G097700 [exp] 247 / 1e-72 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G068800 [exp] 239 / 2e-72 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G169800 [exp] 246 / 3e-72 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G249100 [exp] 233 / 3e-70 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 213 / 1e-62 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027240 [exp] 924 / 0 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 918 / 0 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009616 [exp] 912 / 0 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008989 [exp] 640 / 0 AT3G18600 508 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012172 [exp] 342 / 4e-107 AT5G54910 865 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007574 [exp] 338 / 1e-105 AT5G54910 862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10030523 [exp] 283 / 4e-87 AT2G40700 799 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012874 [exp] 277 / 4e-85 AT2G40700 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004017 [exp] 261 / 9e-79 AT5G63630 797 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009838 [exp] 259 / 2e-78 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF13959 [poplar] [flax] DUF4217 Domain of unknown function (DUF4217)
Representative CDS sequence Show only first row Show all	>Potri.009G045300.2 pacid=42772782 polypeptide=Potri.009G045300.2.p locus=Potri.009G045300 ID=Potri.009G045300.2.v4.1 annot-version=v4.1 ATGGCGGAAGAGAAGCACAACAGATCAGCAGAAGAGGAAGAGATGAAGAAGAAGAGAAAGCGTAAGAGAAACAAAAATAAAAAGGAAGGAAAAGAAGCAG AAGAGAAGAACTCCAATGAAATCGAAGGAGGAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTTAGGCAAGTTGAGGAGGTAAAAGAGAAGAAGAA GAAAAAGAAGAAGAGTAAGAAGGAAGGTGAAGACATGAGTGAAGAGGAAGATAAAGAGAAAGAGACGGTGAAGAAGGTGAAAAGTGGAGGTGGGATTATG AGCACAGAGTCTTTTGACTCTTTGGGATTATCTGAACCCACTCGCAAGGCTATTCAAGAAATAGGGTTTGAGTATATGACTCAGATTCAAGCCAGGGCAA TCCCACCACTTCTAGTAGGAAAAAATGTTCTTGGTGCTGCAAGGACGGGTTCTGGGAAAACTCTTGCATTTCTAATACCAGCTGTAGAGTTACTATATAA TGTTCATTTTGCCCCTCGCAATGGAACAGGCGTGGTTGTTATTTGCCCGACAAGAGAACTTGCTATACAGACTCATGCTGTGGCAAAAGACCTTCTCAAG TATCACTCCCAGACTCTTGGCTTGGTTATTGGTGGTTCCGCAAGAAGAGGAGAAGCAGAACGCATTGTTAAAGGGGTAAATTTACTGGTGGCAACACCTG GTCGACTTCTTGATCATCTTCAAAATACAAAGGGATTTATTTATAAGAACCTAAAGTGCCTCGTGATTGATGAAGCAGACAGGATATTGGAGGCAAACTT TGAGGAAGAAATGAAGCAAATTATCAAGCTTTTACCAAAGGCTAGGCAAACTGCCCTATTTTCGGCTACCCAAACTAAAAAGGTGGAGGACCTTGCTCGC TTGTCATTTCAGACAGCTCCTGTCTATATTGACGTGGATGATGGTAGAACCAAGGTCACAAATGAAGGTCTGCAGCAAGGCTATTGTGTAGTGCCAAGTG CCAAGAGATTTATTCTCTTGTACTCCTTTTTGAAGAGAAATTTGTCAAAGAAAGTGATGGTCTTCTTCTCTTCATGTAACTCTGTTAAGTTCCATTCTGA CCTTCTGAGGTACATCCATGTGGAATGCTTTGATATCCATGGAAAACAAAAGCAACAGAAAAGAACCTCTACCTTTTTTGATTTCTGCAAAGCCGAGAAG GGCATCTTGCTTTGTACTGATGTTGCTGCTCGTGGACTTGATATTCCTGCTGTGGACTGGATTGTGCAGTTTGATCCTCCTGATGAACCTAAGGAATACA TTCACAGGGTTGGTCGAACAGCCCGAGGGGAAGGTGCAAAAGGAAATGCCTTGCTTTTCCTGATTCCGGAAGAGCTGCAATTTTTGCGCTATCTGAAGGC AGCAAAAGTCCCTGTCAAAGAGTATGAATTTGATCAGAAGAAGCTGGCAAATGTTCAATCACATCTGGAGAAGTTGGTGGCCAACAACTACTATTTGAAC CAGTCAGCTAAAGATGCATATAGATCTTACATATTGGCCTATAATTCACATTCTATGAAGGACATCTTTAATGTCCACCGACTAGATCTGCAGGCTGTTG CTGCGTCATTTTGCTTTTCTTCTCCACCAAAGATGAATCTGAATATGGACAGCAGTGCTTCCAAGTTTAGGAAGAAAGCAAATCAAGGAAGCCGAAATGG TTTCAGTGAGATCAATCCGTATGGAAGGCAGAGTGATGGAGATGAAAAGCGACAATTTGTAAGGTATTAG
AA sequence Show only first row Show all	>Potri.009G045300.2 pacid=42772782 polypeptide=Potri.009G045300.2.p locus=Potri.009G045300 ID=Potri.009G045300.2.v4.1 annot-version=v4.1 MAEEKHNRSAEEEEMKKKRKRKRNKNKKEGKEAEEKNSNEIEGGEEEEEEEEEEELRQVEEVKEKKKKKKKSKKEGEDMSEEEDKEKETVKKVKSGGGIM STESFDSLGLSEPTRKAIQEIGFEYMTQIQARAIPPLLVGKNVLGAARTGSGKTLAFLIPAVELLYNVHFAPRNGTGVVVICPTRELAIQTHAVAKDLLK YHSQTLGLVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMKQIIKLLPKARQTALFSATQTKKVEDLAR LSFQTAPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHSDLLRYIHVECFDIHGKQKQQKRTSTFFDFCKAEK GILLCTDVAARGLDIPAVDWIVQFDPPDEPKEYIHRVGRTARGEGAKGNALLFLIPEELQFLRYLKAAKVPVKEYEFDQKKLANVQSHLEKLVANNYYLN QSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSSPPKMNLNMDSSASKFRKKANQGSRNGFSEINPYGRQSDGDEKRQFVRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18600			P-loop containing nucleoside t...		Potri.009G045300 [exp]	0	1
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.007G119800 [exp]	2.00	0.8736
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.012G129200 [exp]	2.00	0.9124
AT3G05060			NOP56-like pre RNA processing ...		Potri.013G032300 [exp]	2.44	0.9140
AT1G75335			unknown protein		Potri.019G095600 [exp]	4.58	0.8750
AT5G06360			Ribosomal protein S8e family p...		Potri.016G070400 [exp]	6.48	0.7637
AT3G12860			NOP56-like pre RNA processing ...		Potri.015G092900 [exp]	7.34	0.8654	NOP56.1
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.015G130900 [exp]	7.74	0.8377
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.006G044100 [exp]	7.93	0.8582	Pt-NAP57.2
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.016G041200 [exp]	7.93	0.8646	Pt-NAP57.1
AT4G01560		MEE49	maternal effect embryo arrest ...		Potri.014G108400 [exp]	8.83	0.7960

Compare expression of checked genes

Potri.009G045300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.