Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58770 327 / 5e-112 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58782 270 / 6e-90 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58780 270 / 9e-90 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58784 263 / 3e-87 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G23410 259 / 7e-86 ACPT cis-prenyltransferase (.1) AT2G23400 217 / 7e-70 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G17570 136 / 4e-38 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60510 126 / 2e-34 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60500 125 / 3e-34 Undecaprenyl pyrophosphate synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G250900 [exp] 470 / 1e-168 AT5G58770 313 / 1e-106 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.001G312700 [exp] 372 / 3e-130 AT5G58770 294 / 2e-99 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.002G039400 [exp] 86 / 2e-19 AT2G17570 259 / 1e-86 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.005G100800 [exp] 79 / 3e-16 AT2G17570 243 / 2e-78 Undecaprenyl pyrophosphate synthetase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036178 [exp] 365 / 7e-126 AT5G58770 357 / 7e-123 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10038313 [exp] 358 / 7e-125 AT5G58770 351 / 8e-122 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10002788 [exp] 119 / 1e-31 AT2G17570 342 / 9e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10032757 [exp] 119 / 2e-31 AT2G17570 344 / 1e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10005789 [exp] 111 / 6e-28 AT2G17570 316 / 2e-107 Undecaprenyl pyrophosphate synthetase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01255 [poplar] [flax] Prenyltransf Putative undecaprenyl diphosphate synthase
Representative CDS sequence Show only first row Show all	>Potri.009G045500.1 pacid=42772660 polypeptide=Potri.009G045500.1.p locus=Potri.009G045500 ID=Potri.009G045500.1.v4.1 annot-version=v4.1 ATGCAATCCTTGAACCTCCCAATACCAATTTACAACAACAATCTAGCTCCTCGAAAAGCTGACAAGCATTCTCTCTTTAGAAACACAAGAGACCAAACGC ACCGTTTCCCTACTTTGCTTCTCGCGGCCAAACATGACTTGGATCTCAAAGAGGAAGAAGATAAAGGAGTGGCGGCTGTGCCTTTGCCGGAGGGGCTACT GAGGGAGGCGATGCCCCGTCACGTGGCGGTGATAATGGATGGCAATGCGAGATGGGCCAGGCAGCGTGGGTTTATAGCATTATCCGCTGGGCATGAAGCT GGTGCACGGTCACTTAGGGAGCTTGTGGAGTTGTGTTGTGACTGGGGGGTTAGAGTTCTCACTGTTTTTGCCTTCTCTTATGATAATTGGATTAGGCCTA AGGTGGAGGTTGATTTCTTGATGAGTTTATTTGAAAGGATGTTGAAGTCCGAGTTGGATAATTTTGTCAGGCAGGGCGCTCGAGTCTCTACAATTGGAGA CTCGTCCAGGCTCTCGGAATCTCTGAAGAAACTGATAAGTGACGTAGAGGAGAAGACGAAAGACAACTCCAGACTTCATCTTATCGTGGCAGTCAGCTAT AGTGGGAAATATGATGTTACACAGGCATGCAAAAGCATTGCTCAAAAGGTAAAGGATGGTACTGTTCAACTAGAAGACATCGATGAAAGCCTACTTGAAC AGGAATTGGAAACAAATTGTGCCGAGTATCCATGCCCTGATTTATTGATACGAACCAGTGGAGAACTTAGAATCAGCAATTTCTTACTGTGGCAGCTGGC CTACACTGAACTCTTCTTCGCAGAAGCACTCTGGCCTGATTTTGGAAAAGCTGAGTTTATAGAGGCCTTGACTTCCTACCAGCAAAGACAGAGACGCTAT GGTGGACGACGTTCATAA
AA sequence Show only first row Show all	>Potri.009G045500.1 pacid=42772660 polypeptide=Potri.009G045500.1.p locus=Potri.009G045500 ID=Potri.009G045500.1.v4.1 annot-version=v4.1 MQSLNLPIPIYNNNLAPRKADKHSLFRNTRDQTHRFPTLLLAAKHDLDLKEEEDKGVAAVPLPEGLLREAMPRHVAVIMDGNARWARQRGFIALSAGHEA GARSLRELVELCCDWGVRVLTVFAFSYDNWIRPKVEVDFLMSLFERMLKSELDNFVRQGARVSTIGDSSRLSESLKKLISDVEEKTKDNSRLHLIVAVSY SGKYDVTQACKSIAQKVKDGTVQLEDIDESLLEQELETNCAEYPCPDLLIRTSGELRISNFLLWQLAYTELFFAEALWPDFGKAEFIEALTSYQQRQRRY GGRRS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58770			Undecaprenyl pyrophosphate syn...		Potri.009G045500 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.017G145000 [exp]	1.00	0.9634
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Potri.002G127100 [exp]	6.70	0.9413
					Potri.001G341700 [exp]	8.00	0.9299
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.001G249800 [exp]	8.83	0.9445
AT5G59750			DHBP synthase RibB-like alpha/...		Potri.001G234900 [exp]	10.00	0.9419
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.018G102500 [exp]	10.39	0.9382
AT1G03670			ankyrin repeat family protein ...		Potri.018G077766 [exp]	12.24	0.9408
AT4G10000			Thioredoxin family protein (.1...		Potri.013G102000 [exp]	13.96	0.9428
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G015601 [exp]	14.45	0.9290
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.001G213200 [exp]	14.49	0.9242

Compare expression of checked genes

Potri.009G045500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.