Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58750 449 / 4e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24220 222 / 5e-69 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, AWI31, VEP1 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G120700 [exp] 234 / 8e-74 AT4G24220 569 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120600 [exp] 234 / 1e-73 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019700 [exp] 233 / 2e-73 AT4G24220 556 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G134500 [exp] 230 / 3e-72 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019600 [exp] 229 / 1e-71 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019500 [exp] 223 / 1e-69 AT4G24220 541 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019400 [exp] 219 / 6e-68 AT4G24220 544 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030700 [exp] 213 / 9e-66 AT4G24220 292 / 2e-96 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030600 [exp] 211 / 6e-65 AT4G24220 271 / 4e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040675 [exp] 451 / 2e-158 AT5G58750 421 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032854 [exp] 234 / 1e-73 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018705 [exp] 231 / 3e-72 AT4G24220 590 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018704 [exp] 213 / 1e-65 AT4G24220 530 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039689 [exp] 210 / 2e-64 AT4G24220 305 / 4e-101 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039686 [exp] 208 / 1e-63 AT4G24220 302 / 5e-100 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039687 [exp] 198 / 1e-59 AT4G24220 271 / 8e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000076 [exp] 169 / 5e-50 AT4G24220 394 / 3e-138 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039688 [exp] 82 / 7e-18 AT4G24220 97 / 1e-23 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10027155 [exp] 62 / 3e-10 AT3G21865 310 / 6e-103 peroxin 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.009G045700.1 pacid=42770802 polypeptide=Potri.009G045700.1.p locus=Potri.009G045700 ID=Potri.009G045700.1.v4.1 annot-version=v4.1 ATGGCAGCTGAGGAATCCAATAATGGAGCTGAAGCTGCTGCTGATTGTGTTGCCATCATTTTTGGGGTCACCGGGCTTGTTGGGAGAGAAATAGCCAGAA GGCTAATCTCAAAAAACAAATGGAAGGTTTATGGCGTTGCTAGAAGGTATGAGAGTTTTCCTATCCTAAGTCCCAACTACCATTTCATCTCATGTGACTT GCTAAACCCTCAAGAGACAGAAATCAAGCTCTCTATGGTGCAAGATGTGACTCATATGTTTTGGGTCACTTGGACAGGCGAATTTCCTCTAGATAGCAGA GAATGCTGTGAACAGAACGAGGCCATGGTGTCCAATGCCTTGAATGTCATCCTCGCCAAATCTAAGGCGTTGAAGCACGTTTCACTCCAAACAGGAATGA AGCATTATTTATCATTGAGAGGTCCTTTTGATGTGAAACAAGTCTCTGTCTACGATGAAAAATGCCCAAGAACAAGTGAAGGTTATAACTTCTATTATGC TCTCGAGGACTTGCTCAAGAAGAGACTAGCTGGTAAAGTGGCATGGTCTGTGCTAAGGCCTGGTTTGTTGACGGGGAGCTCCAACACGGCTTTGTATAAC ATCATGGGTTGTTTAGCTATCTATGGTGCTATTTGCAAACATCTGAACCTCCCTTTTGTGTTTGGAGGGACTAGGGAGTGTTGGGAGGAAGTGTTCATTG ATGGTTCTGATGCTCGGCTAGTCGCTGAACAACACATTTGGGCAGCTACCGATGATGGAATATCTTCCACAGACGGCCAAGCTTTCAACGCAATTAATGG CCCAAGTTTCACATGGAAGGAGATCTGGCCGGTCCTCGGAAAGAAGTTTGGAGCGGAAGTGCCTGAAGAAATGTTTTCAAACGACTTTTGGTTTGCAAAA GCAATGAGTGACAAGAAGGAGGCCTGGCAAGAAATTGTAGTGAAGGAAGGCCTGGTACACACAGAGATGGAAGATTTGGCTAACTGGGAATTCTTGGATA TCTTGTTCCGCTTTCCGATGAAAATGCTAGGAACCCGAGGGAAAGCTGACCGATTGGGTTTTACGATGAGATGCAAGACATTGGAATCAATCTTGTATTG GGTTGATTTCATGAGAGAGGAAAAGATGATCCCTTGA
AA sequence Show only first row Show all	>Potri.009G045700.1 pacid=42770802 polypeptide=Potri.009G045700.1.p locus=Potri.009G045700 ID=Potri.009G045700.1.v4.1 annot-version=v4.1 MAAEESNNGAEAAADCVAIIFGVTGLVGREIARRLISKNKWKVYGVARRYESFPILSPNYHFISCDLLNPQETEIKLSMVQDVTHMFWVTWTGEFPLDSR ECCEQNEAMVSNALNVILAKSKALKHVSLQTGMKHYLSLRGPFDVKQVSVYDEKCPRTSEGYNFYYALEDLLKKRLAGKVAWSVLRPGLLTGSSNTALYN IMGCLAIYGAICKHLNLPFVFGGTRECWEEVFIDGSDARLVAEQHIWAATDDGISSTDGQAFNAINGPSFTWKEIWPVLGKKFGAEVPEEMFSNDFWFAK AMSDKKEAWQEIVVKEGLVHTEMEDLANWEFLDILFRFPMKMLGTRGKADRLGFTMRCKTLESILYWVDFMREEKMIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58750			NAD(P)-binding Rossmann-fold s...		Potri.009G045700 [exp]	0	1
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010700 [exp]	3.60	0.9552
AT2G31090			unknown protein		Potri.011G063900 [exp]	6.48	0.9425
AT5G49350			Glycine-rich protein family (....		Potri.008G108400 [exp]	7.74	0.9473
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.007G072100 [exp]	15.74	0.9370
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.006G089800 [exp]	17.32	0.9353
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Potri.015G090000 [exp]	18.70	0.9366
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G056450 [exp]	19.49	0.9290
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.015G020000 [exp]	21.16	0.9333	NAC021
AT4G14746			unknown protein		Potri.005G051900 [exp]	23.81	0.9341
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.012G069200 [exp]	25.09	0.9326

Compare expression of checked genes

Potri.009G045700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.