Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51860 496 / 5e-174 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1) AT2G38170 481 / 2e-168 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) AT5G01490 421 / 6e-145 ATCAX4, CAX4 cation exchanger 4 (.1) AT1G55730 314 / 5e-103 ATCAX5 cation exchanger 5 (.1.2) AT3G13320 310 / 2e-101 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55720 293 / 1e-94 ATCAX6 cation exchanger 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G251200 [exp] 706 / 0 AT3G51860 490 / 7e-172 cation exchanger 3 (.1) Potri.016G115500 [exp] 528 / 0 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.006G099900 [exp] 522 / 0 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.001G469800 [exp] 303 / 1e-98 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.010G249200 [exp] 296 / 3e-96 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2) Potri.011G166900 [exp] 292 / 2e-94 AT3G13320 627 / 0.0 cation exchanger 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040674 [exp] 523 / 0 AT2G38170 511 / 2e-180 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10027791 [exp] 499 / 3e-175 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10002490 [exp] 484 / 3e-169 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 483 / 9e-169 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10035507 [exp] 478 / 6e-167 AT3G51860 579 / 0.0 cation exchanger 3 (.1) Lus10018231 [exp] 351 / 7e-118 AT3G51860 365 / 1e-123 cation exchanger 3 (.1) Lus10033396 [exp] 293 / 8e-94 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10034853 [exp] 294 / 6e-93 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10027136 [exp] 287 / 8e-92 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10006068 [exp] 278 / 7e-85 AT3G13320 516 / 1e-176 cation exchanger 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [poplar] [flax] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Potri.009G045800.2 pacid=42771228 polypeptide=Potri.009G045800.2.p locus=Potri.009G045800 ID=Potri.009G045800.2.v4.1 annot-version=v4.1 ATGGACCAGTACCACTCACAGGTTCATCAACAGGTCTCATCAGAATTGGAAAATGGAGATGTTAACTATAAGGAAGGCTTGAACAGCAATGACATTAAGG GGGGTTTTGTCAATGGGAAGACACCACAGAATGTTTCATCTTCAATTATTCGAAAGAAATCCGATCCAATGCTTGTTTCATCAAATGTTCGGTTTGAAAT GCTTGGCTATTTCTTGACCAATCTTCAAGAAGTGATTCTTGGAACTAAGCTGGCTGTTCTCTTCCCAGCCATTCCTCTAGCAATTGCTGCTGACTATTAT AAGTTCGGAAGATCTTGGATATTTGCTTTGAGCTTGCTTGGACTCACCCCACTAGCAGAACGTGTCAGCTTCCTCACTGAACAAATTGCATACTTCACTG GTCCAACAGTTGGAGGACTCCTTAATGCAACATGTGGCAATGCAACCGAGCTGATAATAGCAATTCTTGCTCTTTACCAGAACAAAATACATGTCTTGAA GTATTCTCTTTTGGGTTCCATTTTGTCAAATCTCCTTCTAGTTCTTGGGACTTCCCTCCTATGCGGAGGCTTAGCCAACCTAAAAAAGGAACAGAAATAC GATAGAAAGCAGGCTGATGTGAACTCATTACTTTTATTACTGGGGTTGTTGTGCCACATGTTGCCACTGATGTTCAGATATGCCATAGGGGAAGGAACTG CCACTGCCTTCTCTACCCTTGAGTTGTCCAGAGTGAGCAGCATTATTATGCTTATAGCATATGTTGCTTACATCTTCTTCCAGCTAAAAACTCACAGGCA ACTGTTTGATGCTCAAGAGGAAGATGACGAGGAGGAAGAAAAGGCAGTGATAGGATTTTGGAGTGCATTTACTTGGTTGGCTGGCATGACAATTATCATA GCTTTGTTATCTGAGTATGTTGTGGGCACAATTGAGGCTGCATCAGATTCTTGGGGCATTTCTGTCAGTTTCCTCAGCATAATTTTGCTGCCAATAGTGG GGAATGCTGCAGAACATGCTGGATCGGTCATATTTGCTTTCAAGAACAAGCTGGACATATCTTTAGGTGTTGCTCTAGGTTCTGCCACTCAAATTTCAAT GTTTGTGGTCCCTTTATGTGTTGTTGTTGCGTGGACAATGAACATCCATATGGACCTTGATTTCAGTCTCCTTGAAACCGGTTCTCTTGCTTTCACAATA ATTATCACGGCCTTCACTTTACAGGATGGAACTTCACACTACATGAAAGGACTACTTCTTTTCCTTTGCTACATTGTGATTGCTGCGTGCTTTTTTGTTC ACAAAATCCCTCAGAATCAAATCTCGCAAGGCAAACCATTCAATGGACTCTTTGCAGCTTAG
AA sequence Show only first row Show all	>Potri.009G045800.2 pacid=42771228 polypeptide=Potri.009G045800.2.p locus=Potri.009G045800 ID=Potri.009G045800.2.v4.1 annot-version=v4.1 MDQYHSQVHQQVSSELENGDVNYKEGLNSNDIKGGFVNGKTPQNVSSSIIRKKSDPMLVSSNVRFEMLGYFLTNLQEVILGTKLAVLFPAIPLAIAADYY KFGRSWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALYQNKIHVLKYSLLGSILSNLLLVLGTSLLCGGLANLKKEQKY DRKQADVNSLLLLLGLLCHMLPLMFRYAIGEGTATAFSTLELSRVSSIIMLIAYVAYIFFQLKTHRQLFDAQEEDDEEEEKAVIGFWSAFTWLAGMTIII ALLSEYVVGTIEAASDSWGISVSFLSIILLPIVGNAAEHAGSVIFAFKNKLDISLGVALGSATQISMFVVPLCVVVAWTMNIHMDLDFSLLETGSLAFTI IITAFTLQDGTSHYMKGLLLFLCYIVIAACFFVHKIPQNQISQGKPFNGLFAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.009G045800 [exp]	0	1
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.001G251200 [exp]	2.00	0.9325
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Potri.008G004700 [exp]	3.16	0.9123
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.017G010300 [exp]	3.46	0.9039
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.010G127400 [exp]	3.74	0.8789
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.009G157600 [exp]	4.00	0.8787
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Potri.007G015100 [exp]	4.47	0.8961
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Potri.017G089900 [exp]	5.00	0.8953
AT5G27730			Protein of unknown function (D...		Potri.005G025200 [exp]	6.48	0.8877
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.005G124200 [exp]	7.93	0.8459
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.005G117000 [exp]	8.48	0.8201

Compare expression of checked genes

Potri.009G045800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.