Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58730 433 / 6e-152 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 50 / 1e-06 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 48 / 6e-06 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 45 / 5e-05 STH pfkB-like carbohydrate kinase family protein (.1) AT1G50390 43 / 7e-05 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 44 / 0.0001 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 43 / 0.0002 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 42 / 0.0006 pfkB-like carbohydrate kinase family protein (.1) AT1G19600 42 / 0.0008 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G251500 [exp] 629 / 0 AT5G58730 433 / 3e-152 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 51 / 6e-07 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.005G229100 [exp] 46 / 3e-05 AT1G19600 558 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 46 / 3e-05 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 45 / 9e-05 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.002G034000 [exp] 44 / 0.0001 AT1G19600 556 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 44 / 0.0001 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 43 / 0.0003 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040669 [exp] 504 / 2e-179 AT5G58730 392 / 8e-136 pfkB-like carbohydrate kinase family protein (.1) Lus10018235 [exp] 493 / 3e-175 AT5G58730 388 / 2e-134 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 51 / 9e-07 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 49 / 4e-06 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 44 / 0.0002 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10007397 [exp] 43 / 0.0004 AT1G19600 518 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10024268 [exp] 42 / 0.0005 AT1G19600 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 42 / 0.0005 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10020346 [exp] 42 / 0.0005 AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 42 / 0.0006 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [poplar] [flax] Ribokinase PF00294 [poplar] [flax] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Potri.009G046200.1 pacid=42771785 polypeptide=Potri.009G046200.1.p locus=Potri.009G046200 ID=Potri.009G046200.1.v4.1 annot-version=v4.1 ATGGTAGCAACAGCAGCAGCAGCCCACAAACCCCAACAGCAGCAAACCCGTGTTTTGATTGTGGGCAATTACTGCCACGATGTTTTGATCCAAGACGACA CCGTCAAAGCCGAATCACTTGGTGGTGCAGCCTCTTTCATTTCCAATGTTGTCAATGGAATGTCGATTCCTTGTAATTTAGTTTCAAAAGTTGGGGAAGA TTTTAAATACCCGGTTGATTATACCCCAATTGTCATACCCACTTCAAAAACTACTGTTTTTCATGCTTATTTTGATCTAGGTATTCTTGAGAATGGTCAT CAAGATCGGGTCTTGAAACGGGTCTGTGCTTGTGACCCGATTCGGCCATCGGATCTTCCTGATGTGAGGTCCAATTTTGGAATGGCAGTTGGTGTTGGCG GGGAAATACTTCCCGAGACGCTTGAGAGGATGATTGAGATTTGTGATGCTGTTTTTGTTGATATTCAAGCATTAATCAGGGTGTTTGATAGTGTTGATGG TACTGTTAAGCTTGTAAAGTTAGAGGAGACGGAATTTTATTCGATGTTGCCGCGAATTGGGGTTTTGAAGGCGTCATCGGAGGAGGCGGTGTTTATGGAT GTGGAGGAGGTGAGGAAGTGGTGTTGTGTGGTGGTGACCACTGGGAAAGATGGTTGTAAAGTGTATTGGAAAGACGGGGAGTTGAGGATTTCACCCTTTT CGGCGAATCAAGAGGATCCGACCGGTGCAGGGGATAGTTTTTTAGGCGGGTTTGTGGCGGGGTTGGTTCAAGGTTTGGCTGTGCCTGATGCTGCTTTGTT GGGGAACTTGTTTGGTTCTCTCACTGTTGAACAAATTGGATTGCCTAAGTTTGATTCAAGATTGTTGCAGAGAGTGAAGGATGAGGTGCAGAGAAGGAAA ATGCAGTGTCTGCATTGTGAGAGAAGTGATAATGAGCTGGATTTCTTGAAGCCAGTTGGGCATGAACAGTTCCACGCTTCCCTTGGTTCAGCAAAATTAA TACCCCCATGTTCCAGTCAAGCTCGTCCATGGACTCCATCAAATTCTCCCAAGGAGACGGAGCAGACTCCTATTCCACATTACACGGCGCAGGCTAAATT ATTGGTTAACTCTGTGTATGAAGAACCAATTCAAACAGTTGAGGGAAAACCATGA
AA sequence Show only first row Show all	>Potri.009G046200.1 pacid=42771785 polypeptide=Potri.009G046200.1.p locus=Potri.009G046200 ID=Potri.009G046200.1.v4.1 annot-version=v4.1 MVATAAAAHKPQQQQTRVLIVGNYCHDVLIQDDTVKAESLGGAASFISNVVNGMSIPCNLVSKVGEDFKYPVDYTPIVIPTSKTTVFHAYFDLGILENGH QDRVLKRVCACDPIRPSDLPDVRSNFGMAVGVGGEILPETLERMIEICDAVFVDIQALIRVFDSVDGTVKLVKLEETEFYSMLPRIGVLKASSEEAVFMD VEEVRKWCCVVVTTGKDGCKVYWKDGELRISPFSANQEDPTGAGDSFLGGFVAGLVQGLAVPDAALLGNLFGSLTVEQIGLPKFDSRLLQRVKDEVQRRK MQCLHCERSDNELDFLKPVGHEQFHASLGSAKLIPPCSSQARPWTPSNSPKETEQTPIPHYTAQAKLLVNSVYEEPIQTVEGKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58730			pfkB-like carbohydrate kinase ...		Potri.009G046200 [exp]	0	1
AT1G32350		AOX1D	alternative oxidase 1D (.1)		Potri.003G103900 [exp]	8.24	0.8837
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G007100 [exp]	9.16	0.8664
AT1G78340		ATGSTU22	glutathione S-transferase TAU ...		Potri.019G130566 [exp]	9.48	0.8523
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.006G175500 [exp]	10.39	0.8778	Pt-ATTPS11.1
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G007000 [exp]	12.16	0.8744
AT1G29290			unknown protein		Potri.011G070500 [exp]	12.24	0.8693
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.006G202700 [exp]	13.41	0.8401
AT3G02645			Plant protein of unknown funct...		Potri.001G205100 [exp]	13.67	0.8506
AT1G61260			Protein of unknown function (D...		Potri.011G126900 [exp]	15.16	0.8729
					Potri.014G022200 [exp]	21.67	0.8147

Compare expression of checked genes

Potri.009G046200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.