Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58720 417 / 3e-141 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) AT3G15390 94 / 4e-20 SDE5 silencing defective 5 (.1.2) AT2G26280 67 / 1e-11 CID7 CTC-interacting domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G401900 [exp] 137 / 1e-34 AT3G15390 273 / 2e-85 silencing defective 5 (.1.2) Potri.011G051300 [exp] 102 / 4e-23 AT3G15390 271 / 5e-85 silencing defective 5 (.1.2) Potri.004G042100 [exp] 100 / 4e-22 AT3G15390 271 / 2e-85 silencing defective 5 (.1.2) Potri.006G218900 [exp] 69 / 4e-12 AT2G26280 699 / 0.0 CTC-interacting domain 7 (.1) Potri.018G047700 [exp] 69 / 5e-12 AT2G26280 700 / 0.0 CTC-interacting domain 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018236 [exp] 511 / 5e-178 AT5G58720 417 / 2e-141 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) Lus10040668 [exp] 502 / 2e-174 AT5G58720 416 / 1e-140 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) Lus10018188 [exp] 103 / 2e-23 AT3G15390 241 / 1e-73 silencing defective 5 (.1.2) Lus10025646 [exp] 81 / 4e-16 AT3G15390 159 / 6e-44 silencing defective 5 (.1.2) Lus10009796 [exp] 74 / 2e-13 AT2G26280 701 / 0.0 CTC-interacting domain 7 (.1) Lus10038081 [exp] 73 / 3e-13 AT2G26280 693 / 0.0 CTC-interacting domain 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01713 [poplar] [flax] Smr Smr domain PF08590 [poplar] [flax] DUF1771 Domain of unknown function (DUF1771)
Representative CDS sequence Show only first row Show all	>Potri.009G046300.2 pacid=42772783 polypeptide=Potri.009G046300.2.p locus=Potri.009G046300 ID=Potri.009G046300.2.v4.1 annot-version=v4.1 ATGATGCAACAACACAATAAGAAGAAGAAGAAGCGATCCGCTTCACGTGCCTCTAAACCCATCTCACTTGACGGAGGTCAGGGTCAACAATCGCAACGGC AACAAAATCCGGAGCAGAGACAGGAAGGAACCAAAGTAGTTGAGGCTTTAATGGAAGCATTTGACTCGATCTCTGTAGAAGAAGCCGAAGAGGCTTATAG GGAAGCGAAGGGAGATATTAACAAAGCGGCGCAGATTTTGGAGAATTTCATGGAAAATAGTGAGGATCCATCGACAAGTTCCTTTTCGAGTGGGTTATCG GGTTTTGGTTTGGGTTCGAGCTCGAGTAGTAGTGCGGGTTCGAGTTCGGCTTCAAGGGATGGGTTTTTGGAGGGGAATTTGGTGAATAGGAAAGGGTTTC GAGGAGGGAACAAGCAGAAGAGAGTTTTGGCGGTTACGGGGACGGTCTCGACGGTTTTAGGGAAGGAGTATGTTAAGGCCAGCCCGAGAAGGGATTCTAT GAAAGCAAAGGACTTTGGGAATGGTGTTGTGGAGAAAGAAGAGGCGGAACAGTTTTTGTGTTCGATGCTTGGTAATGATTGTGAGCTCAGCATGGGTGTT GTTAGAGATGTTCTTTGTCAGTGCGGATATGATGTTGAAAAGGCGTTGGATGTGTTGCTTGATTTATCAGCTTCCTCCCATGAACAGTCAAGAAGTGGTA GACATGTTAAAGATTCTGTAAACTATAAAGAAGATGCCAGATTTCTTGCTGAGCGCAGTGACAATTCGACTGATGTGGCTTCTGATTGCACTTCCCATTC TTCTGAAAGTGAACTTCAGGATAGTGTTTGGGGCTGTGGTTACAGGAATTATTATCAGGCCCTTACTAGTTTCGAAGCTCCATCTTCAACTACCCCAATA AGCAATGAGTCAAATCTCCCTCAAAAGGTTTTGGAATGTTTGTTCAATGTTCCCATGAGTTCTGAACATGAACCAAGCACTATGAATTGGAGGAATGTAG TAAAGAAAATGCAATCACTGGGGCCTGCTGTTGATGTCTTTCCATCTATTGATGCACTTCCTCAGCAGAATAACTATGCCAATGGTGAAGAATATCATCT TCTTAGAGAATCTGCAAAGCGACACTGGAATTCAAGGACCTCATACTATCAAAAAGCTGCAGCAGCATATTCAAAGGGAGAGAGGGGGTATGCAGCTTAC CTTTCAGATCAGGGGAGGATACAAACTAAGTTGGCGCAGGAGGCAGATAAAAAGGCAAGCCAGGATATCTTTAAAGCTAGAAACAAGGGCATAACAAATG TCATAACAATTGATTTGCATGGGCAACATGTCAAACAAGCAATGAGGGTTTTGAAACTTCATCTTCTATTTGGAACTTATGTGCGCTCAATTCAAACTCT CAGAGTAATCACAGGATGTGGGAGTCGTGGTCTGGGAAAGTCAAAAGTCAAACAAGCGGTCACAAGACTCCTGGAGAATGAAGGTATTGAATGGAGTGAA GAAAACCAAGGAGTGTTGTTAATCAAGATTGATGGATACAAAGAGTATAGCTTTCCAGATATAGATAGCGATACTGACTAA
AA sequence Show only first row Show all	>Potri.009G046300.2 pacid=42772783 polypeptide=Potri.009G046300.2.p locus=Potri.009G046300 ID=Potri.009G046300.2.v4.1 annot-version=v4.1 MMQQHNKKKKKRSASRASKPISLDGGQGQQSQRQQNPEQRQEGTKVVEALMEAFDSISVEEAEEAYREAKGDINKAAQILENFMENSEDPSTSSFSSGLS GFGLGSSSSSSAGSSSASRDGFLEGNLVNRKGFRGGNKQKRVLAVTGTVSTVLGKEYVKASPRRDSMKAKDFGNGVVEKEEAEQFLCSMLGNDCELSMGV VRDVLCQCGYDVEKALDVLLDLSASSHEQSRSGRHVKDSVNYKEDARFLAERSDNSTDVASDCTSHSSESELQDSVWGCGYRNYYQALTSFEAPSSTTPI SNESNLPQKVLECLFNVPMSSEHEPSTMNWRNVVKKMQSLGPAVDVFPSIDALPQQNNYANGEEYHLLRESAKRHWNSRTSYYQKAAAAYSKGERGYAAY LSDQGRIQTKLAQEADKKASQDIFKARNKGITNVITIDLHGQHVKQAMRVLKLHLLFGTYVRSIQTLRVITGCGSRGLGKSKVKQAVTRLLENEGIEWSE ENQGVLLIKIDGYKEYSFPDIDSDTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58720			smr (Small MutS Related) domai...		Potri.009G046300 [exp]	0	1
AT2G23450			Protein kinase superfamily pro...		Potri.005G130900 [exp]	1.41	0.8482
AT5G10290			leucine-rich repeat transmembr...		Potri.005G074200 [exp]	4.35	0.8500
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.009G022900 [exp]	5.74	0.8466
AT4G27190			NB-ARC domain-containing disea...		Potri.018G145532 [exp]	8.71	0.8445
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.010G043700 [exp]	10.58	0.8010
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Potri.002G120200 [exp]	11.61	0.8129
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.002G068700 [exp]	12.00	0.8062
AT1G14740			Protein of unknown function (D...		Potri.008G138100 [exp]	13.03	0.8225
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G019100 [exp]	14.07	0.8280	CNGC.1
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.008G109200 [exp]	16.73	0.8258

Compare expression of checked genes

Potri.009G046300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.