Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29950 100 / 4e-28 ELF4-L1 ELF4-like 1 (.1) AT2G40080 88 / 2e-23 ELF4 EARLY FLOWERING 4, Protein of unknown function (DUF1313) (.1) AT2G06255 80 / 2e-20 ELF4-L3 ELF4-like 3 (.1) AT1G17455 74 / 7e-18 ELF4-L4 ELF4-like 4 (.1.2) AT1G72630 70 / 2e-16 ELF4-L2 ELF4-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G251600 [exp] 187 / 7e-63 AT2G29950 109 / 6e-32 ELF4-like 1 (.1) Potri.008G068200 [exp] 106 / 8e-31 AT2G40080 112 / 2e-33 EARLY FLOWERING 4, Protein of unknown function (DUF1313) (.1) Potri.001G170100 [exp] 80 / 2e-20 AT1G17455 158 / 1e-51 ELF4-like 4 (.1.2) Potri.003G063900 [exp] 80 / 2e-20 AT1G17455 156 / 7e-51 ELF4-like 4 (.1.2) Potri.006G143800 [exp] 79 / 6e-20 AT1G17455 166 / 1e-54 ELF4-like 4 (.1.2) Potri.019G131700 [exp] 65 / 2e-14 AT2G06255 107 / 2e-31 ELF4-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018237 [exp] 126 / 3e-38 AT2G29950 112 / 6e-33 ELF4-like 1 (.1) Lus10040667 [exp] 122 / 1e-36 AT2G29950 108 / 4e-31 ELF4-like 1 (.1) Lus10028288 [exp] 86 / 1e-22 AT2G40080 110 / 1e-32 EARLY FLOWERING 4, Protein of unknown function (DUF1313) (.1) Lus10000408 [exp] 80 / 3e-20 AT1G17455 148 / 1e-47 ELF4-like 4 (.1.2) Lus10001250 [exp] 80 / 4e-20 AT1G17455 148 / 1e-47 ELF4-like 4 (.1.2) Lus10000371 [exp] 80 / 4e-20 AT1G17455 140 / 2e-44 ELF4-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07011 [poplar] [flax] Elf4 Early Flowering 4 domain
Representative CDS sequence Show only first row Show all	>Potri.009G046400.2 pacid=42771646 polypeptide=Potri.009G046400.2.p locus=Potri.009G046400 ID=Potri.009G046400.2.v4.1 annot-version=v4.1 ATGAACAACACAACCGTTACAGCTTCACCAAATCCAAACAAAAAGCGTATAAAAAACGACAGAGGAGGAGCAAAGAAGGAAGAAGAGTGTGACGCGGAGG CGTGGGATACCCTGAGCAAGAGTTTCAAGCACGTGCAGAGCGTACTGGATCACAACAGTGACTTGATTAAACAAGTGAACGCGAATCACCAGTCGAAGAT TCCAGATAATCTCGTTAAAAACGTTTCATTAATTCGCGAGATTAATGGAAATATCACCAAGGTAATGTCGATTTACTCCGATTTATCATTCAAAGTCTCC AACATTGTTGAGGAACGGCGTCGCCTTAAGAATGGAGGAGAAAGCAAGTTGGAGAGCGCTAGCAACGAGTCTTGA
AA sequence Show only first row Show all	>Potri.009G046400.2 pacid=42771646 polypeptide=Potri.009G046400.2.p locus=Potri.009G046400 ID=Potri.009G046400.2.v4.1 annot-version=v4.1 MNNTTVTASPNPNKKRIKNDRGGAKKEEECDAEAWDTLSKSFKHVQSVLDHNSDLIKQVNANHQSKIPDNLVKNVSLIREINGNITKVMSIYSDLSFKVS NIVEERRRLKNGGESKLESASNES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Potri.009G046400 [exp]	0	1
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Potri.001G113800 [exp]	6.32	0.8224
					Potri.008G136566 [exp]	12.16	0.8100
					Potri.018G003201 [exp]	14.42	0.8094
AT1G71210			Pentatricopeptide repeat (PPR)...		Potri.003G000601 [exp]	15.42	0.7899
AT1G67623			F-box family protein (.1)		Potri.001G321400 [exp]	19.97	0.7537
					Potri.019G045466 [exp]	20.49	0.7826
AT5G08305			Pentatricopeptide repeat (PPR)...		Potri.007G073100 [exp]	22.64	0.8097
					Potri.008G224228 [exp]	25.61	0.7853
					Potri.008G224246 [exp]	26.66	0.7838
AT3G16640		TCTP	translationally controlled tum...		Potri.010G013400 [exp]	27.23	0.7673	Pt-TCTP.2

Compare expression of checked genes

Potri.009G046400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.