Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58620 552 / 0 C3HZnF zinc finger (CCCH-type) family protein (.1) AT2G40140 419 / 1e-138 C3HZnF ATSZF2, CZF1, ZFAR1 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) AT2G41900 404 / 5e-131 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT3G55980 398 / 2e-130 C3HZnF ATSZF1 salt-inducible zinc finger 1 (.1) AT5G12850 373 / 3e-119 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT4G29190 187 / 3e-53 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G19810 187 / 6e-53 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT2G25900 184 / 1e-52 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT5G07500 179 / 2e-51 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G03790 174 / 7e-48 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252600 [exp] 1080 / 0 AT5G58620 572 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.010G187900 [exp] 688 / 0 AT2G40140 570 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.008G069400 [exp] 674 / 0 AT2G40140 557 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.012G145800 [exp] 644 / 0 AT2G40140 585 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.016G053700 [exp] 414 / 1e-134 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053900 [exp] 410 / 8e-134 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G266700 [exp] 409 / 6e-133 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 408 / 2e-132 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G061000 [exp] 407 / 2e-132 AT2G41900 672 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007493 [exp] 622 / 0 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10028970 [exp] 617 / 0 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10019709 [exp] 403 / 8e-130 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10040662 [exp] 345 / 2e-112 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1) Lus10035006 [exp] 191 / 4e-54 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10012922 [exp] 189 / 1e-53 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10017708 [exp] 174 / 4e-49 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033665 [exp] 172 / 4e-48 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018621 [exp] 162 / 3e-44 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018243 [exp] 140 / 7e-38 AT5G58620 100 / 3e-24 zinc finger (CCCH-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.009G046800.3 pacid=42771078 polypeptide=Potri.009G046800.3.p locus=Potri.009G046800 ID=Potri.009G046800.3.v4.1 annot-version=v4.1 ATGTGCAGTGGTTCAAAGAGGAAACCAACACATACTGGTTTCAACATGGAGAATGAATTTCAAAAGCAAGATGGGGTTTGCTGTGATTTCTCTCTTTTGC TCGAGTTGTCTGCCTCGAATGATTTGACCGGGTTTAAGAGAGCAATTGAAGTGGAGGGACATGATATTGATGAGCCAGGTTTGTGGTATGGAAGGAGAAT TGGCTCGAAAAAGATGGGGTTTGAGGAGAGGACACCCCTCATAATTGCTGCCTTGTACGGAAGCAAAGATGTGTTGAATTATATCTTGGAAACAGGTCAT GTAGATGTCAACAGAGGTTATGGTTCTGATGGGGCCACAGCGCTTCACTGTGCTGCTGCCGGTGGCTCTTCTTCTGCACATGAGGTTGTCAGGCTCTTGC TTGATGCCTCTGCTGATCCTAATTCCGTTGATGCCAATGGAAATCACCCTGGTGACTTGATTGCCCCTGTTGTTGAGTCTGGTTCTAATTCAACGAGAAA GACCCTGGAGATCATGTTAAAGGGTGGCAGTAGTGGTGAAGAATCATGTGTTTTGGCTTATCAAATTGTAAACGAGATGGATGGGCTGGAACAGCAAGAA ATTTCAACGCCAAGGGTTTCAAAAGATGGGCACGAGAAGAAAGAGTATCCTATTGATCTGACACTTCCTGATATTAAGAATGGGATATATGGGACTGACG AGTTTAGAATGTATACATTTAAGGTCAAGCCTTGCTCAAGGGCTTACTCTCATGACTGGACAGAGTGCCCATTTGTGCACCCTGGAGAGAATGCTAGGCG TCGTGACCCCAGGAAATACCACTATAGCTGTGTTCCATGTCCTGAGTTTCGAAAGGGGTCTTGCAGGCAGGGTGATGCCTGTGAATATGCACATGGTATA TTTGAGTGCTGGCTTCATCCTGCCCAGTATAGAACTCGTCTTTGTAAAGATGAGACAGGTTGCGCTAGGAGGGTGTGTTTCTTTGCTCACAAGCCTGAAG AGCTTCGCCCCCTGTATGCCTCTACAGGTTCGGCAGTGCCTTCTCCTAGATCCTACTCAGCAAATTGTTCAAATTTGGACATGAGTTCTATAAGCCCACT TTCCCTTGGTTCTCCATCTGTCTTGATACCATCCACATCAAGCCCACCAACTCCCTCCGGTTCCTCTTCACCTATCGGTGGATGGACAAACCATTCTAAT GTGGTGCCCCCTGCATTGCAGCTTCCTGGTAGCAGGTTGAAATCTGCTTTGTGTGCTCGAGATATGGATTTAGACATGGAATTGCTTGGGCTTGAAAGTC ACCGTCGAAGGCAGCAGTTTATGGATGAGATTTCTGGTCTGTCATCTCCCTCCAGCTGGAACAATGGTCTGTCCACTGCCTCAGCTTTTGCTGCCTCTGG TGATCGAACTGGGGAGTTGAATAGGCTTGGAGGAGTGAGGCCAACTAACCTTGAAGATATTTTTGGATCCCTTGATCCTTCAATTTTGCCTCAGATGCAG GGACTCTCACTGGATGCTGCAGTAGCTCAATTGCAGCCTCCAACAGGGATGCAGATGCGCCAGAACATCAACCAGCAGCTTCGGTCCAGCTATCCCACCA GCTTCTCATCATCTCCTGTGAGAAGATCACCATCTTTTGGAGTTGATCATTCTGGAGGGGCAGCAGCAGCAGCTTTGAGTTCAAGATCTGCTGCCTTTGC AAAGCGTAGCCAGAGCTTTGTGGAACGAAGTGCTGTGAATCGTCATACTGGGTTTTCTTCACCATCATCTTCAGCAAACGTAATGCCTTCTAACCTTTCT GACTGGGGCTCTCCTGATGGAAAATTAGATTGGGGTATCCAGGGAGAAGAGCTCAATAAGCTCCGGAAGTCCGCTTCTTTTGGTTTTCGAAGCAATGGCA GCAGTTTTGCTACAGCTGGTGCCTCAGTGCCAGCAACTGTTGATGAGCCGGATGTTTCATGGGTACAGTCCCTGGTGAAGGATACTCCTGCAAAATCTGG GCCATTGGGTTTTGAGGAGCAGCAGCAGCAATGTCATCTTAACATTGGAGGTTCAGAGACCCTCCCAGCTTGGGTGGAGCAGCTGTACATGGAGCAGAAG CCATTGGTGGCTTAG
AA sequence Show only first row Show all	>Potri.009G046800.3 pacid=42771078 polypeptide=Potri.009G046800.3.p locus=Potri.009G046800 ID=Potri.009G046800.3.v4.1 annot-version=v4.1 MCSGSKRKPTHTGFNMENEFQKQDGVCCDFSLLLELSASNDLTGFKRAIEVEGHDIDEPGLWYGRRIGSKKMGFEERTPLIIAALYGSKDVLNYILETGH VDVNRGYGSDGATALHCAAAGGSSSAHEVVRLLLDASADPNSVDANGNHPGDLIAPVVESGSNSTRKTLEIMLKGGSSGEESCVLAYQIVNEMDGLEQQE ISTPRVSKDGHEKKEYPIDLTLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCRQGDACEYAHGI FECWLHPAQYRTRLCKDETGCARRVCFFAHKPEELRPLYASTGSAVPSPRSYSANCSNLDMSSISPLSLGSPSVLIPSTSSPPTPSGSSSPIGGWTNHSN VVPPALQLPGSRLKSALCARDMDLDMELLGLESHRRRQQFMDEISGLSSPSSWNNGLSTASAFAASGDRTGELNRLGGVRPTNLEDIFGSLDPSILPQMQ GLSLDAAVAQLQPPTGMQMRQNINQQLRSSYPTSFSSSPVRRSPSFGVDHSGGAAAAALSSRSAAFAKRSQSFVERSAVNRHTGFSSPSSSANVMPSNLS DWGSPDGKLDWGIQGEELNKLRKSASFGFRSNGSSFATAGASVPATVDEPDVSWVQSLVKDTPAKSGPLGFEEQQQQCHLNIGGSETLPAWVEQLYMEQK PLVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G046800 [exp]	0	1
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	1.00	0.9506
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G252600 [exp]	1.41	0.9098
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G257900 [exp]	3.00	0.8991
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.001G362300 [exp]	3.46	0.8959	Pt-MRP3.1
AT1G68710			ATPase E1-E2 type family prote...		Potri.012G058000 [exp]	6.00	0.8822	Pt-ALA9.2
AT4G24200			Transcription elongation facto...		Potri.005G241400 [exp]	6.32	0.8834
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.008G096400 [exp]	6.55	0.8536	Pt-RPK1.1
AT3G14840			Leucine-rich repeat transmembr...		Potri.019G009800 [exp]	7.34	0.8683
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Potri.001G285800 [exp]	7.48	0.8870
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Potri.002G094200 [exp]	8.00	0.8589	DREB19

Compare expression of checked genes

Potri.009G046800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.