Plant FIBer expression Database

Potri.009G046900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G58630 74 / 2e-14 unknown protein
AT5G01370 45 / 8e-05 ACI1 ALC-interacting protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G117400
[exp]
82 / 1e-16 AT5G01370 85 / 1e-17 ALC-interacting protein 1 (.1)
Potri.001G252604
[exp]
0 / 1 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040661
[exp]
63 / 8e-11 AT5G58630 55 / 3e-08 unknown protein
Lus10018244
[exp]
60 / 1e-09 AT5G58630 60 / 6e-10 unknown protein
Lus10002480
[exp]
59 / 2e-09 AT5G01370 81 / 1e-16 ALC-interacting protein 1 (.1)
Lus10001252
[exp]
0 / 1 AT5G01370 61 / 3e-10 ALC-interacting protein 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14383 VARLMGL DUF761-associated sequence motif
Representative CDS sequence
>Potri.009G046900.1 pacid=42772646 polypeptide=Potri.009G046900.1.p locus=Potri.009G046900 ID=Potri.009G046900.1.v4.1 annot-version=v4.1
ATGAAACTGTTACCGTCTCCTTCTATCTCATCTTCCTCCACTTCTTCTTTTGATCCAAATATGTGCACTTCAAAAAGTGCCACTGCTAGTTGCCTTACAG
GTCTTCTACGTCGAATTCTGTGCTCTCGCAGCCTCCCTACACACCCATCTGACCAAATCACTGAAACAAGTTCAATACTTTGTGATGGTAGACACCAAGA
ACTCATCAAGTCAAATGAGAAACTTGAGACCACTGCCGCTACTCCTGGTGTTGTGGCTAGGCTAATGGGATTGGAGTCTTTCCCAGAAACTAGTTCAGTT
GATATGAGAATCAGTGCTAACTCGATATCAAGAAGTCGGTCGATGAATTCTGTGGAGTTTAGAGGTGAAAGCGATCAAATGCAAGGGCAGCATAGAAGGG
TTAACAGTACATTGTCGTTTCGGGAGATGCCAACTTTTCTTGAGGTAGAAAATAAGGAATACTTTGTTCTTAGCTTTGAGAATATTGGAAGTGAAAGCAA
GAAAGTTAGATCTAAAGAGAGGAAATGTGAAGTGGGTTCTGGAGAATTGAAGGAGAAAAGAAGAGAAAAATGTAAAAGGAAGGAAAACAGAAGAGAGAAA
GCAGTGGAATCGGAGAAGAGAGAAAGTGAAGAGAAAATCAACAAGATGGTTTTGAAAGTTTTAAAGGAGTCAGAGTTGAGTAACAGACTATTAGAAGATC
ATAAGCCTGCTCAAGAAGTTGGCAATGGTGGCAAAATTGAGGATTCACCCGCTCACATGAGTCTAAAGGGCAGTGAAATAGTTTCCTTAGAAAATAAATG
GTTGTATCATAAGGAAGTCTCTGGCATTGGAGCAGAATTAAGGAGGAGAAACAAGAAAACAAAAGGACGTGCATTCAAAAATGAGGAAGCAGAGTTCAGC
TCACAGGATTCCAGCCCTGTTTCTGTTCTTGATTTTGATCAATTCATCGTTGATCCAGACGTTACTAAATCAGAGGAAGATACAAAGTCAGGGGAGTCTA
ATTCGAGGAGGAAATTATCCCCCCAACTTGAGAATCAAAATCACAAACACTTGTCACAACGCAGCGATGGTAACTTGATCTTCGACAACCGAAATTCCAA
TAAAACTGAAGAACCTTGTCCAGGGTCAAGGAAGAAAGTTTGCCATAATCATGACTACTTAAACATGTGGGATGAAGTTTGCAAGCTGACAGAAACTCAA
GTGGTCGAGACAAATTTGAATGCATACAAAAATATGTGTAAATTCGAAGAAGATTTTGAAGAAATCAGTGCAGATTTTGGGTTGCAAATCTTGGATCAGT
TGTTAAAGGAGCTTGTAGATCAACTTGCTTGA
AA sequence
>Potri.009G046900.1 pacid=42772646 polypeptide=Potri.009G046900.1.p locus=Potri.009G046900 ID=Potri.009G046900.1.v4.1 annot-version=v4.1
MKLLPSPSISSSSTSSFDPNMCTSKSATASCLTGLLRRILCSRSLPTHPSDQITETSSILCDGRHQELIKSNEKLETTAATPGVVARLMGLESFPETSSV
DMRISANSISRSRSMNSVEFRGESDQMQGQHRRVNSTLSFREMPTFLEVENKEYFVLSFENIGSESKKVRSKERKCEVGSGELKEKRREKCKRKENRREK
AVESEKRESEEKINKMVLKVLKESELSNRLLEDHKPAQEVGNGGKIEDSPAHMSLKGSEIVSLENKWLYHKEVSGIGAELRRRNKKTKGRAFKNEEAEFS
SQDSSPVSVLDFDQFIVDPDVTKSEEDTKSGESNSRRKLSPQLENQNHKHLSQRSDGNLIFDNRNSNKTEEPCPGSRKKVCHNHDYLNMWDEVCKLTETQ
VVETNLNAYKNMCKFEEDFEEISADFGLQILDQLLKELVDQLA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G58630 unknown protein Potri.009G046900
[exp]
0 1
AT1G78700 BZR BEH4 BES1/BZR1 homolog 4 (.1) Potri.011G071800
[exp]
2.00 0.7999
AT5G38690 Zinc-finger domain of monoamin... Potri.018G024400
[exp]
2.82 0.8370
AT5G52860 ABCG8 ATP-binding cassette G8, ABC-2... Potri.015G027600
[exp]
7.34 0.7799
AT3G16060 ATP binding microtubule motor ... Potri.018G079800
[exp]
13.85 0.7746
AT5G65360 Histone superfamily protein (.... Potri.003G207700
[exp]
14.00 0.7892
AT4G24630 DHHC-type zinc finger family p... Potri.007G077000
[exp]
14.28 0.7926
AT3G62110 Pectin lyase-like superfamily ... Potri.002G186900
[exp]
16.61 0.7882
Potri.001G151601
[exp]
19.89 0.7529
AT2G07170 ARM repeat superfamily protein... Potri.006G079500
[exp]
20.97 0.7788
AT4G12740 HhH-GPD base excision DNA repa... Potri.014G198000
[exp]
27.20 0.6770

Potri.009G046900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.