Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29990 757 / 0 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT1G07180 745 / 0 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT4G28220 231 / 3e-69 NDB1 NAD(P)H dehydrogenase B1 (.1) AT4G05020 216 / 3e-63 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT4G21490 214 / 6e-63 NDB3 NAD(P)H dehydrogenase B3 (.1) AT2G20800 201 / 6e-58 NDB4 NAD(P)H dehydrogenase B4 (.1) AT5G08740 95 / 1e-20 NDC1 NAD(P)H dehydrogenase C1 (.1) AT3G27820 50 / 4e-06 ATMDAR4 monodehydroascorbate reductase 4 (.1) AT3G09940 47 / 3e-05 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G036300 [exp] 724 / 0 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 722 / 0 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.013G147300 [exp] 218 / 3e-64 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.004G034100 [exp] 214 / 7e-63 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.013G147200 [exp] 214 / 1e-62 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.011G042500 [exp] 208 / 1e-60 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.013G147400 [exp] 204 / 3e-59 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.007G098700 [exp] 81 / 3e-16 AT5G08740 710 / 0.0 NAD(P)H dehydrogenase C1 (.1) Potri.001G346200 [exp] 54 / 2e-07 AT3G27820 723 / 0.0 monodehydroascorbate reductase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036185 [exp] 765 / 0 AT1G07180 742 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10038322 [exp] 765 / 0 AT1G07180 746 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10040657 [exp] 749 / 0 AT1G07180 750 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10020091 [exp] 716 / 0 AT1G07180 674 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10006731 [exp] 711 / 0 AT1G07180 679 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10018248 [exp] 326 / 1e-109 AT1G07180 328 / 3e-110 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10018249 [exp] 280 / 3e-91 AT2G29990 274 / 3e-89 alternative NAD(P)H dehydrogenase 2 (.1) Lus10039769 [exp] 276 / 2e-86 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018541 [exp] 234 / 4e-70 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10006737 [exp] 217 / 7e-64 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00070 [poplar] [flax] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.009G047100.6 pacid=42772411 polypeptide=Potri.009G047100.6.p locus=Potri.009G047100 ID=Potri.009G047100.6.v4.1 annot-version=v4.1 ATGTCTCTCTTTAGAAATCTAATTCAACTCTCTACTTCCAAATCCAAACCTCTCTTACAAAACCCAAATTTCCTCTTCACTTCACTCTCCCACTTCACCA CCGACACGCCGACGAGGTATGCCGGCCTGGAACCTACCAAGGGGGACGAGAAGCCCAGAGTGGTGGTGCTGGGCTCGGGTTGGGCGGGATGTAGGCTAAT GAAAGGAATTGACACTGATTTGTACGATGTCGTATGCGTGTCGCCGAGAAACCACATGGTTTTCACCCCTCTGTTAGCTTCCACGTGTGTTGGGACTTTG GAGTTTAGGTCCGTGGCGGAACCCATTGGTCGGATCCAACCTGCCATATCGAAAGCACCTGGGTCTTACTTTTTTCTTGCGAATTGTACTAGCCTTGATA CAGAGAAACATATGGTGCATTGTGAGACTGTTACGGATGGATTGGACACAGTGGATCCATGGAGGTTTAAAATTTCGTATGATAAGTTAATAATTGCATT GGGAGCAGAAGCATTGACCTTTGGAATTCATGGCGTGAAAGAGCATGCAATTTTTCTTAGAGAGGTTCGCCATGCTCAGGAAATCCGCAGGAAGCTACTA CTCAACTTGATGCTGTCTGATATGCCTGGTCTCTCAGAAGAAGAGAAGAGCAGATTGTTACATTGTGTTGTTGTAGGAGGTGGTCCCACGGGAGTAGAAT TCAGTGGTGAACTCAGCGATTTTATCTTGAAAGATGTTCGTCAAACATACTCGCATGTGAAAGATTACATACATGTTACTTTGATTGAGGCAAATGAGAT CTTGTCTTCCTTTGATGATAGCCTCCGTCGCTATGCTACCAAGCAGTTGACAAAGTCAGGAGTTCATCTTGTCCGTGGGATTGTCAAGGATGTGAAACCG CAGAAGCTAATTCTAACCGATGGCACAGAGGTTCCATATGGTCTGTTGGTGTGGTCTACAGGTGTTGGCCCCTCATCATTTGTAAAATCTCTGGAACTTT CCAAGTCTCCTGGTGGACGGATTGGTATTGATGAGTGGCTGCGAGTTCCTTCAGTGCCAGATGTGTTTGCAATTGGTGACTGCAGTGGGTTTCTTGAAAG TACTGGCAAACCAGTTCTTCCCGCGTTGGCTCAGGTGGCAGAGCGTCAAGGAAAATATCTTGCAAAACTATTGAATAAAATTGGTAAAGATGGTGGAGGG CGCAGAACCAGTGGTGAAGAAGTAGAATTAGGGGATCCATTTGTTTACAGGCATCTGGGAAGCATGGCAACTATCGGTCGCTACAAGGCGCTTGTGGATC TTAGACAGAGCAAAGAGGCAAAAGGATTAGCTCTGAAAGGATTTGCGAGTTGGTTTATATGGCGTTCTGCATATCTGACACGTGTTATAAGCTGGAGGAA TAGGTTCTATGTGGCTATTAACTGGGCTACAACATTTGTCTTTGGCCGTGATATAAGCAGAATATAG
AA sequence Show only first row Show all	>Potri.009G047100.6 pacid=42772411 polypeptide=Potri.009G047100.6.p locus=Potri.009G047100 ID=Potri.009G047100.6.v4.1 annot-version=v4.1 MSLFRNLIQLSTSKSKPLLQNPNFLFTSLSHFTTDTPTRYAGLEPTKGDEKPRVVVLGSGWAGCRLMKGIDTDLYDVVCVSPRNHMVFTPLLASTCVGTL EFRSVAEPIGRIQPAISKAPGSYFFLANCTSLDTEKHMVHCETVTDGLDTVDPWRFKISYDKLIIALGAEALTFGIHGVKEHAIFLREVRHAQEIRRKLL LNLMLSDMPGLSEEEKSRLLHCVVVGGGPTGVEFSGELSDFILKDVRQTYSHVKDYIHVTLIEANEILSSFDDSLRRYATKQLTKSGVHLVRGIVKDVKP QKLILTDGTEVPYGLLVWSTGVGPSSFVKSLELSKSPGGRIGIDEWLRVPSVPDVFAIGDCSGFLESTGKPVLPALAQVAERQGKYLAKLLNKIGKDGGG RRTSGEEVELGDPFVYRHLGSMATIGRYKALVDLRQSKEAKGLALKGFASWFIWRSAYLTRVISWRNRFYVAINWATTFVFGRDISRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29990		NDA2	alternative NAD(P)H dehydrogen...		Potri.009G047100 [exp]	0	1
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.002G261000 [exp]	2.44	0.9214
AT1G79710			Major facilitator superfamily ...		Potri.001G041600 [exp]	3.16	0.9124
AT2G34960		CAT5	cationic amino acid transporte...		Potri.003G154600 [exp]	4.00	0.9223	CAT5.1
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	4.24	0.9151
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004100 [exp]	4.89	0.9088
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Potri.010G041100 [exp]	5.09	0.9082
AT3G06880			Transducin/WD40 repeat-like su...		Potri.015G117300 [exp]	6.08	0.9258
AT3G03620			MATE efflux family protein (.1...		Potri.013G069600 [exp]	6.92	0.9210
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.002G259900 [exp]	10.29	0.8794
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.018G011800 [exp]	11.83	0.9072

Compare expression of checked genes

Potri.009G047100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.