Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60500 548 / 0 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) AT3G12990 462 / 4e-163 RRP45A ribonuclease PH45A (.1.2.3) AT3G07750 121 / 4e-31 3'-5'-exoribonuclease family protein (.1.2) AT1G60080 99 / 7e-23 3'-5'-exoribonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G253200 [exp] 819 / 0 AT3G60500 526 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.014G166200 [exp] 120 / 1e-30 AT3G07750 422 / 3e-150 3'-5'-exoribonuclease family protein (.1.2) Potri.016G055600 [exp] 102 / 3e-24 AT1G60080 442 / 8e-158 3'-5'-exoribonuclease family protein (.1) Potri.006G051200 [exp] 102 / 4e-24 AT1G60080 434 / 8e-155 3'-5'-exoribonuclease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009708 [exp] 620 / 0 AT3G60500 476 / 3e-166 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10036022 [exp] 526 / 0 AT3G60500 439 / 4e-150 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10001173 [exp] 112 / 1e-27 AT3G07750 466 / 6e-168 3'-5'-exoribonuclease family protein (.1.2) Lus10001747 [exp] 111 / 2e-27 AT3G07750 462 / 2e-166 3'-5'-exoribonuclease family protein (.1.2) Lus10021789 [exp] 106 / 1e-25 AT1G60080 439 / 7e-157 3'-5'-exoribonuclease family protein (.1) Lus10034605 [exp] 97 / 4e-22 AT1G60080 425 / 1e-150 3'-5'-exoribonuclease family protein (.1) Lus10012336 [exp] 71 / 3e-13 AT3G07750 340 / 6e-118 3'-5'-exoribonuclease family protein (.1.2) Lus10006382 [exp] 69 / 1e-12 AT3G07750 332 / 1e-114 3'-5'-exoribonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF01138 [poplar] [flax] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [poplar] [flax] PF03725 [poplar] [flax] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Potri.009G047500.4 pacid=42771371 polypeptide=Potri.009G047500.4.p locus=Potri.009G047500 ID=Potri.009G047500.4.v4.1 annot-version=v4.1 ATGGATGGAAGATTAGCGAATACATGGAGATTAACATTGAACGAGAAGAAATTCATAGAGACTGCCTTGGCTTCAAACCTTAGAATTGATGGTCGTAATC CTCTTGAGTATCGCAAAATTACCATCAAGTTTGGAAGAGAAGATGGATCATCAGAGGTGCAGCTAGGACAGACTCATGTAATGGGTTTTGTGACAGGTCA ATTAGTTCAGCCTTATCAAGACCGACAGAATGAAGGGACACTTTCTATTTTTACCGAGTTCTCTCCGATGGCTGATCCTTCATTCGAACCAGGCCGCCCT GGGGAATCTGCAGTGGAGTTGGGCCGTATAGTTGATCGTGGTCTAAGGGAGAGCAGGGCTGTGGATACAGAATCGCTTTGTGTTCTTGCCGGGAAGTTAG TGTGGGCCATTCGTATTGACCTTCATATCTTAGACAATGGGGGAAATCTTGTTGATGCTGCCAATATTGCTGCCTTAGCCTCTCTCTTAACGTTTAGAAG ACCAGAATGCACTTTAGGAGGTGAAGATGGTCAAGAAGTGATAGTACATCCACCAGAGGAAAGAGAGCCGCTTCCTTTGATAGTCCACCATCTCCCTATA GCAATAACTTTTGCATTTTTCGGTGGTGAGGGCAAAATGGTTGTTGATCCTACCCAAAGTGAGGAGGCTGTTATGGGTGGAAGAATGACTGTAACGGTTA ATGCGAATGGTGACATTTGTGCAATTCAGAAACCTGGAGGGGAGGGTGTGCCACAGAGTGCTATTATGCATTGTTTGCAACTTGCTTCTTTGAGTGCTGA ATCCATAACAAAGAAGATAAAAAATGCAGTTGAAGCATACAACACAGAGAGAGCATTACGCAAGATCAAGCGCCACCCTACTTCTGGTGCTGGCAATGTT AGTGTAGCTGCTCTTGATGTAACAGAGCAAAATAAAACCATTGAGCAGGTGGAAGGTAGTGAGTTGTCAAGGCATCATATGGAGAGATTAAAGTTGGTAC CTGATGAAACCTGCAGTGGTAGAGGTAATGACAATGATGGTGATATCAAACCATCTAAACTAGGTGGAACAGGTCGAGGACAGGGCAATGCTATGAATTT TCTTGGGGGTCCATCAAGCTGGGATCCTTATTTGAAGGTCGTTGATCCTGATTCCCTGAAAGCCTCTCTAGCCTCACGTGGAGTATCAACACGGCACGTG AAACAAAAAGGAAGCGAGGAAAATAGTCCCAAAACTGATCCAGAGAAACCAACCGAAGATATTAAACAAGCAACTTTAGCTACAGATACATCTGGAACTG CACTGCAAACAAATGGAGAGAAAACATTGAAGGATGCTGTGAAGCCCAAGAACAAGAGGAGAAAGAGAGCTTCTCCCAGCATGAAAGGAAGTTAG
AA sequence Show only first row Show all	>Potri.009G047500.4 pacid=42771371 polypeptide=Potri.009G047500.4.p locus=Potri.009G047500 ID=Potri.009G047500.4.v4.1 annot-version=v4.1 MDGRLANTWRLTLNEKKFIETALASNLRIDGRNPLEYRKITIKFGREDGSSEVQLGQTHVMGFVTGQLVQPYQDRQNEGTLSIFTEFSPMADPSFEPGRP GESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECTLGGEDGQEVIVHPPEEREPLPLIVHHLPI AITFAFFGGEGKMVVDPTQSEEAVMGGRMTVTVNANGDICAIQKPGGEGVPQSAIMHCLQLASLSAESITKKIKNAVEAYNTERALRKIKRHPTSGAGNV SVAALDVTEQNKTIEQVEGSELSRHHMERLKLVPDETCSGRGNDNDGDIKPSKLGGTGRGQGNAMNFLGGPSSWDPYLKVVDPDSLKASLASRGVSTRHV KQKGSEENSPKTDPEKPTEDIKQATLATDTSGTALQTNGEKTLKDAVKPKNKRRKRASPSMKGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Potri.009G047500 [exp]	0	1
AT1G63810			unknown protein		Potri.007G024600 [exp]	1.73	0.8603
AT2G03667			Asparagine synthase family pro...		Potri.010G157700 [exp]	2.00	0.8058
AT3G09720			P-loop containing nucleoside t...		Potri.019G065300 [exp]	2.82	0.8243
AT1G30240			unknown protein		Potri.010G238000 [exp]	5.47	0.8221
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Potri.015G004600 [exp]	6.32	0.7529
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.015G053100 [exp]	9.53	0.7489	Pt-ARP4.1
AT5G01660			unknown protein		Potri.016G127600 [exp]	10.58	0.7377
AT5G27400			S-adenosyl-L-methionine-depend...		Potri.005G039000 [exp]	10.81	0.7562
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Potri.019G081100 [exp]	12.60	0.6896
AT3G07660			Kinase-related protein of unkn...		Potri.011G079800 [exp]	12.96	0.7456

Compare expression of checked genes

Potri.009G047500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.