Plant FIBer expression Database

Potri.009G047700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G13360 707 / 0 SGAT, AGT1, AGT L-serine:glyoxylate aminotransferase, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, alanine:glyoxylate aminotransferase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G253300
[exp]
773 / 0 AT2G13360 703 / 0.0 L-serine:glyoxylate aminotransferase, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, alanine:glyoxylate aminotransferase (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009710
[exp]
725 / 0 AT2G13360 742 / 0.0 L-serine:glyoxylate aminotransferase, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, alanine:glyoxylate aminotransferase (.1.2)
Lus10022424
[exp]
706 / 0 AT2G13360 725 / 0.0 L-serine:glyoxylate aminotransferase, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, alanine:glyoxylate aminotransferase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF00266 Aminotran_5 Aminotransferase class-V
Representative CDS sequence
>Potri.009G047700.6 pacid=42771555 polypeptide=Potri.009G047700.6.p locus=Potri.009G047700 ID=Potri.009G047700.6.v4.1 annot-version=v4.1
ATGAATATAGTTTGTTTGTGGTATTCTGCAGGGGGGAAGATGGACTACTTTTATGGACCAGGAAGGAATCATCTGTTTGTTCCAGGGCCGGTTAACATCC
CAGAACCAGTCATTCGGGCAATGAATAGGAACAACGAGGATTACCGTTCACCAGCAGTTCCAGCCATGACAAAAACTCTTCTTGAGGATGTGAAGAAGAT
TTTCAAGACTACCTCAGGAATTCCATTTCTCATCCCAACCACAGGCACTGGTGCATGGGAGAGTGCACTTACCAACACATTGTCTCCTGGAGATCGAACT
GTGTCTTTCTTGATAGGCCAATTCAGTTTGCTCTGGATTGATCAGCAACAACGCCTTGGTTTCAATGTTGATGTTGTAGAAAGTGACTGGGGTCAAGGTG
CCAACCTTGACATCCTGGCCTCAAAACTTGCGGAAGATACTGCACACACCATTAAGGCTGTTTGCATTGTTCACAATGAGACAGCAACTGGAGTTACCAA
CAACTTGGCTAAAGTTAGAAAAATACTTGATGACTACAGCCATCCAGCTCTCTTCCTTGTTGATGGAGTGTCCTCCATTTGTGCCCTTGATTTCCGTATG
GATGAATGGGGAGTAGATGTGGCTTTAACTGGCTCTCAAAAGGCTCTTTCTCTTCCTACCGGGATGGGTATTGTGTGTGCAAGCCCTAAAGCTATCGAGG
CATCTAAAACTGCAAAGTCGGTTAGAGTCTTCTTTGACTGGAAGGACTATTTGAAGTTCTACAACCTTGGAACATTTTGGCCATACACTCCTTCCATCCA
ATTGTTGTATGGACTTAGAGCAGCACTGGATCTCCTTTTTGCGGAAGGGCTTGAGAATGTGTTTGAAAGGCATGCTCGTCTGGGAAAAGCAACAAGGCTT
GCTGTGGAGGCATGGGGCTTGAAGAACTGTACTCAAAAGGAGGAATGGTTCAGTGACACAGTGACTGCTGTAGTTGTTCCCCCGTACATTGATAGTGCAG
AAATTGTTAGGAGGGGATGGAAAAGATACAACTTAAGCTTAGGTTTGGGCCTTAACAAAGTAGCTGGCAAGGTTTTCAGAATAGGGCATCTCGGCAACCT
GAACGAGCTGCAATTGCTGGGCTGCCTTGCTGGAGTGGAGATGATACTCAAGGATGTGGGTTACCCGGTAAAGTTGGGAAGTGGAGTAGCAGCTGCTTGT
GCTTATCTGCAGAATAATACCCCTCTGATCGCTTCCAGGGTTTGA
AA sequence
>Potri.009G047700.6 pacid=42771555 polypeptide=Potri.009G047700.6.p locus=Potri.009G047700 ID=Potri.009G047700.6.v4.1 annot-version=v4.1
MNIVCLWYSAGGKMDYFYGPGRNHLFVPGPVNIPEPVIRAMNRNNEDYRSPAVPAMTKTLLEDVKKIFKTTSGIPFLIPTTGTGAWESALTNTLSPGDRT
VSFLIGQFSLLWIDQQQRLGFNVDVVESDWGQGANLDILASKLAEDTAHTIKAVCIVHNETATGVTNNLAKVRKILDDYSHPALFLVDGVSSICALDFRM
DEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASKTAKSVRVFFDWKDYLKFYNLGTFWPYTPSIQLLYGLRAALDLLFAEGLENVFERHARLGKATRL
AVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDSAEIVRRGWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAAC
AYLQNNTPLIASRV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G13360 SGAT, AGT1, AGT L-serine:glyoxylate aminotrans... Potri.009G047700
[exp]
0 1
AT1G70760 NdhL, CRR23 NADH dehydrogenase-like comple... Potri.010G110400
[exp]
1.00 0.9911
AT5G61410 RPE, EMB2728 EMBRYO DEFECTIVE 2728, D-ribul... Potri.015G062100
[exp]
2.00 0.9878
AT2G47910 CRR6 chlororespiratory reduction 6 ... Potri.006G060100
[exp]
2.00 0.9827
AT2G41040 S-adenosyl-L-methionine-depend... Potri.006G060400
[exp]
3.16 0.9798
AT3G09050 unknown protein Potri.006G096700
[exp]
3.87 0.9822
AT4G03280 PGR1, PETC PROTON GRADIENT REGULATION 1, ... Potri.019G118500
[exp]
3.87 0.9843 PETC.1
AT4G31530 NAD(P)-binding Rossmann-fold s... Potri.001G253900
[exp]
5.65 0.9807
AT3G14420 Aldolase-type TIM barrel famil... Potri.001G394400
[exp]
6.48 0.9813
AT1G03130 PSAD-2 photosystem I subunit D-2 (.1) Potri.010G089400
[exp]
8.48 0.9800 PSAD1.1
AT1G32060 PRK phosphoribulokinase (.1) Potri.003G099400
[exp]
9.79 0.9815

Potri.009G047700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.