Plant FIBer expression Database

Potri.009G048000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G09150 397 / 1e-138 ATHY2, GUN3, HY2 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G253700
[exp]
555 / 0 AT3G09150 400 / 4e-140 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022422
[exp]
458 / 3e-162 AT3G09150 386 / 3e-134 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Lus10009713
[exp]
454 / 3e-161 AT3G09150 383 / 1e-133 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05996 Fe_bilin_red Ferredoxin-dependent bilin reductase
Representative CDS sequence
>Potri.009G048000.1 pacid=42771391 polypeptide=Potri.009G048000.1.p locus=Potri.009G048000 ID=Potri.009G048000.1.v4.1 annot-version=v4.1
ATGGTGAGCTCATGTGTTAAGAGTTTCAGTGAAAGCTTCACTTCAATGGACTTCTGTTCTTCTTTGCAAACTGCGCGCTTATCTTCTTCACTAATAAAAC
CTCAATTATTAACCAGCAGCTTAATCTTTAGTAGCATCACCACTAATTTCGCAAGCAAGAAGTGTAAACCTCATCGTGTCTTGAAAGTCTCTGCAGGTTC
TTTTTCTTACCACAAGTTCATTCATTTTGCTCTCAACGAAACCAAACGACACGCCCTTTTGGTCCCTTCTCCTCTCCAGGAAAAATATAGTTCCATGACT
GCGATGGACGGAACTACAGAGCTTCAAATGCTTTCATTCCAAGCTCCCAAAATCAGACTCCTACGTAGTTTGAGCATTGAAAATGAAGCGATGCAGATTT
TAGATTTTGCTGTTTTTGCCAGACCTGAATTTGATGTACCCATATTTTGTGCCAACTTTTTCTCCACTGCCACCATAAACATCATTGTGTTGGACCTCAA
CCCCTTGCACAATGTCATTGACCAAAGAGACTACAAGGAAAAGTACTTTAAGAGATTAATTCCTTTAGGCCTCAAGTATTGCAAGCTTTTTCCTTGGGGA
GGAAAGCTCACAAGCGAGTCCTTGAAGTTTTTCTCACCGATCGTGATATGGACCAAGTTTCCTCCAAGTCAGGATAGTTATGATGCTTTATATTCTGCTT
TCACAGAGTACTACAAGGCATGGCTTGAACTGATTGACCAAGCACCAGAGGAGATAGATGCATCTCATATTACATTCAATCGTGAAGCGCAACATAAGTA
TCTAACGTGGAGAGAAGAAAAGGATCCTGGCCATGGAATTCTTAAAAGGTTGATTGGAGAAAGGCTTGCAAAGGACTTGGTTAGAAACTTCCTCTTCAAT
GGACTTGATGAACTAGGCAGTAAAGGATTTTTGGATTACTTTCCAGAATATCGCCGCGAGGATGGGTCTATAAACGAGAAGCGCAGCATCATTGGAAAGT
CTTTTGAAAAGCGTCCCTGGGATGCAAGAGGAGAATTCATCGGTGGTAATGGTGTTATACCGTCTTAA
AA sequence
>Potri.009G048000.1 pacid=42771391 polypeptide=Potri.009G048000.1.p locus=Potri.009G048000 ID=Potri.009G048000.1.v4.1 annot-version=v4.1
MVSSCVKSFSESFTSMDFCSSLQTARLSSSLIKPQLLTSSLIFSSITTNFASKKCKPHRVLKVSAGSFSYHKFIHFALNETKRHALLVPSPLQEKYSSMT
AMDGTTELQMLSFQAPKIRLLRSLSIENEAMQILDFAVFARPEFDVPIFCANFFSTATINIIVLDLNPLHNVIDQRDYKEKYFKRLIPLGLKYCKLFPWG
GKLTSESLKFFSPIVIWTKFPPSQDSYDALYSAFTEYYKAWLELIDQAPEEIDASHITFNREAQHKYLTWREEKDPGHGILKRLIGERLAKDLVRNFLFN
GLDELGSKGFLDYFPEYRREDGSINEKRSIIGKSFEKRPWDARGEFIGGNGVIPS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G09150 ATHY2, GUN3, HY... GENOMES UNCOUPLED 3, ARABIDOPS... Potri.009G048000
[exp]
0 1
AT1G09575 Protein of unknown function (D... Potri.013G161300
[exp]
2.44 0.8074
AT4G38540 FAD/NAD(P)-binding oxidoreduct... Potri.004G176950
[exp]
5.00 0.8337
AT4G16745 Exostosin family protein (.1.2... Potri.003G079000
[exp]
7.00 0.7931
AT1G31500 DNAse I-like superfamily prote... Potri.003G106000
[exp]
7.54 0.7707
AT1G21710 OGG1, ATOGG1 ARABIDOPSIS 8-OXOGUANINE-DNA G... Potri.005G180700
[exp]
17.40 0.7302 OGG1.1
AT4G33540 metallo-beta-lactamase family ... Potri.010G169900
[exp]
24.37 0.8179
AT1G33970 P-loop containing nucleoside t... Potri.013G104800
[exp]
36.00 0.7635
AT5G04760 MYB Duplicated homeodomain-like su... Potri.008G016400
[exp]
40.24 0.7188
AT1G11050 Protein kinase superfamily pro... Potri.017G132250
[exp]
52.15 0.7537
ATCG00680 ATCG00680.1, PS... photosystem II reaction center... Potri.011G074868
[exp]
53.23 0.7804

Potri.009G048000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.