Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77210 353 / 3e-119 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT4G02050 272 / 1e-87 STP7 sugar transporter protein 7 (.1) AT5G26340 259 / 1e-82 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT3G19940 228 / 1e-70 Major facilitator superfamily protein (.1) AT1G11260 223 / 1e-68 ATSTP1, STP1 sugar transporter 1 (.1) AT1G50310 221 / 8e-68 ATSTP9 sugar transporter 9 (.1) AT4G21480 214 / 1e-65 STP12 sugar transporter protein 12 (.1) AT3G19930 214 / 2e-65 ATSTP4, STP4 sugar transporter 4 (.1) AT5G23270 193 / 2e-57 ATSTP11, STP11 sugar transporter 11 (.1) AT3G05960 181 / 8e-53 ATSTP6 sugar transporter 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G253800 [exp] 454 / 1e-158 AT1G77210 737 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.009G048500 [exp] 423 / 4e-148 AT1G77210 516 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.018G085200 [exp] 380 / 8e-130 AT1G77210 771 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.006G189100 [exp] 271 / 3e-87 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.018G113300 [exp] 269 / 3e-86 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.008G151100 [exp] 241 / 1e-75 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.004G109765 [exp] 238 / 3e-74 AT1G11260 630 / 0.0 sugar transporter 1 (.1) Potri.004G101950 [exp] 236 / 2e-73 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.004G101900 [exp] 236 / 2e-73 AT1G11260 625 / 0.0 sugar transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022421 [exp] 359 / 2e-121 AT1G77210 790 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Lus10036325 [exp] 273 / 7e-88 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10009714 [exp] 261 / 4e-84 AT1G77210 329 / 3e-108 sugar transport protein 14, sugar transporter 14 (.1.2) Lus10002450 [exp] 257 / 1e-81 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10010534 [exp] 257 / 1e-81 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 239 / 1e-74 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10013441 [exp] 231 / 7e-72 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10002597 [exp] 219 / 3e-67 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10018422 [exp] 217 / 2e-66 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10040993 [exp] 213 / 8e-66 AT1G50310 601 / 0.0 sugar transporter 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.009G048200.2 pacid=42770921 polypeptide=Potri.009G048200.2.p locus=Potri.009G048200 ID=Potri.009G048200.2.v4.1 annot-version=v4.1 ATGTGGATCAATAAGCTTCTTCTCTGGAGCTGTTATCAATGCATGTGCAATGAATATTGCAATGCTGATCATAGGACGGTTACTTCTAGGTGTAGGCATT GGATTCAGCAACCAGGTGCTATTCTCCTTCCTGAGACGCCCAACAGCCTTGTAGAACAAGGAAAGTTAGAAGAAGGAAGAAAAATATTGGAGGAAGTTAG AGGTACAACGAATGTTGATGCTGAGTTTGCTGATCTTATTGATGCAAGTAACGAAGCAAAAGCCATAAAGAACCCTTTCAGGAATCTCTTAAGACGGAAG AATCGCCCCCAATTGATAATTGGGGCCCTGGAAATCCCAATGTTTCAACAGCTCACTGGAATGAATTCTATTATGCTCCTGTCTTCTTCCAAAGCTTGGG TTTTGCGGCAGGAACGTCTCTTTATTCATCTATCATTACTAGTGGGGCACTTTTTGTTGGCGCGCTCACGTCAATCGCATTTGTCGACAAATTTGGCAGA AGAACTTTTTTTTATTGAAGCTAGTTTTGAAATGTTCAGCTACATGGTGGCTTTGGCAGTAACTCTTGCCCTGAAGTTCGGACAAGGAGAAGCTCTCTCG AAAGCACTCAGCGTGTTCCTAGTCGTTATCATTTGCTTGTGTTGCTTTGCTTATGGAAGGTCTTGGGGTCCTCTAGGGTGGTTAGTTCCAAGCGAGCTCT TTCCATTGGAGACAAGGTCAGCTGGACAAAGTATTGTGGGCTGTGTCAACATGATCTTCACAGCATTGATAGCACAATGCTTTCTCGTGTCTCTCTGCCA TCTTCGTTATGGGTTTTTCTTGTTATTTGGTGCCATGGTTGCCTTCATGGGCAGCTTCATCTTCTTTCTCCTGCCAGAAACAAAGCAAGTCCCAATAGAG GAGGTATACCTTCTCTTTCAAAACCATTGGTACTGGAAGAAAATAGTAGGAGATGGCACCAATGATGATGAATTGGATGGAAAGAAGGGACAAGCAACTT AG
AA sequence Show only first row Show all	>Potri.009G048200.2 pacid=42770921 polypeptide=Potri.009G048200.2.p locus=Potri.009G048200 ID=Potri.009G048200.2.v4.1 annot-version=v4.1 MWINKLLLWSCYQCMCNEYCNADHRTVTSRCRHWIQQPGAILLPETPNSLVEQGKLEEGRKILEEVRGTTNVDAEFADLIDASNEAKAIKNPFRNLLRRK NRPQLIIGALEIPMFQQLTGMNSIMLLSSSKAWVLRQERLFIHLSLLVGHFLLARSRQSHLSTNLAEELFFIEASFEMFSYMVALAVTLALKFGQGEALS KALSVFLVVIICLCCFAYGRSWGPLGWLVPSELFPLETRSAGQSIVGCVNMIFTALIAQCFLVSLCHLRYGFFLLFGAMVAFMGSFIFFLLPETKQVPIE EVYLLFQNHWYWKKIVGDGTNDDELDGKKGQAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.009G048200 [exp]	0	1
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.013G161800 [exp]	2.82	0.8860	Pt-KAO2.1,CYP88A8
AT3G14470			NB-ARC domain-containing disea...		Potri.013G041800 [exp]	4.00	0.8624
AT3G50150			Plant protein of unknown funct...		Potri.016G039300 [exp]	6.00	0.8424
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Potri.011G025800 [exp]	8.94	0.8326
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445150 [exp]	11.66	0.8520
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Potri.014G152700 [exp]	12.32	0.8348
					Potri.001G444100 [exp]	14.07	0.8467
AT3G50150			Plant protein of unknown funct...		Potri.016G039200 [exp]	14.28	0.8355
AT1G15200			protein-protein interaction re...		Potri.001G208200 [exp]	16.88	0.8612
AT4G14370			Disease resistance protein (TI...		Potri.011G014501 [exp]	23.00	0.8305

Compare expression of checked genes

Potri.009G048200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.