Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77210 517 / 0 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT4G02050 395 / 2e-134 STP7 sugar transporter protein 7 (.1) AT5G26340 359 / 4e-120 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT3G19940 340 / 6e-113 Major facilitator superfamily protein (.1) AT1G50310 323 / 3e-106 ATSTP9 sugar transporter 9 (.1) AT1G11260 311 / 2e-101 ATSTP1, STP1 sugar transporter 1 (.1) AT4G21480 308 / 2e-100 STP12 sugar transporter protein 12 (.1) AT3G19930 306 / 1e-99 ATSTP4, STP4 sugar transporter 4 (.1) AT5G23270 300 / 3e-97 ATSTP11, STP11 sugar transporter 11 (.1) AT3G05960 288 / 1e-92 ATSTP6 sugar transporter 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G253800 [exp] 640 / 0 AT1G77210 737 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.018G085200 [exp] 538 / 0 AT1G77210 771 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.009G048200 [exp] 416 / 5e-145 AT1G77210 353 / 2e-119 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.018G113300 [exp] 392 / 3e-133 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.006G189100 [exp] 388 / 2e-131 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.008G151100 [exp] 343 / 1e-113 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.010G089800 [exp] 324 / 2e-106 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.004G233500 [exp] 320 / 5e-105 AT5G61520 574 / 0.0 Major facilitator superfamily protein (.1.2) Potri.001G248900 [exp] 320 / 9e-105 AT5G26250 652 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022421 [exp] 507 / 3e-178 AT1G77210 790 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Lus10036325 [exp] 388 / 1e-131 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10010534 [exp] 357 / 4e-119 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 354 / 4e-118 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 343 / 1e-113 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10013441 [exp] 331 / 3e-109 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10002597 [exp] 319 / 5e-105 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10018422 [exp] 317 / 9e-104 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10040993 [exp] 287 / 2e-93 AT1G50310 601 / 0.0 sugar transporter 9 (.1) Lus10005870 [exp] 289 / 4e-93 AT5G26250 601 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.009G048500.1 pacid=42771572 polypeptide=Potri.009G048502.1.p locus=Potri.009G048500 ID=Potri.009G048500.1.v4.1 annot-version=v4.1 ATGGCAGGGGGGGCTTTTGCAGATGGAGCAGCCCTTAAGGGGGCTCATCTCTACGAGTATAAAACTACTATTTATTTCATCCCTTTTTGGGAGTATGAAA GGAAGCGGCGTCCTCTCCACAAGACGGATTGCTGCAAATATGACAACCAGATACTTGCACTATTCACGTCTTCATTGTACTTGGGGCCCTTTAAAGGCCG GAGTGCAAGCATACTTTGTGGATCAATAAGCTTCTTCTGTGGAGCTGTTATCAATGCATGTGCAATGAATATTGCAATGCTGATCATAGGACGGTTACTT CTAGGTGTAGGCATTGGATTCAGCAACCAGGCAGTTCCCTTGTATCAGTCAGAAATGTCTCCTGCAAAAACCCGGATCCTAGTAGCAAATCTTGTAAATT ACGGAACTGAAAAAATCCATCCATGGGGTTGGAGGTTATCTCTTGGCTCAGCTGTAATCCCTGCAGTTTTAATGAGTGTAGGTGCTATTCTCCTTCCTGA GACCCCCAACAGCCTTGTAGAACAAGAAAAGTTAGAAGAAGGAAGAAAAATATTGGAGGAAGTTAGAGGTACAACGAATGTTGATGCTGAGTTTGCTGAT CTTATTGATGCAAGTAACGAAGCAAAAGCCATAAAGAACCCTTTCAGGAATCTCTTAAGACGGAAGAATCGCCCCCAATTGATAATTGGGGCCCTGGGAA TCCCAGTGTTTCAACAGCTCACTGGAATGAATTCTATATACTCTTCTGTGGTCCTTGGGGCACTTCTTGTTGGCGCGCTCACGTCAATGGGATTAGTCGA CAAATTTGGCAGAAGAACTTTTTTTATTGAAGCTAGTATTGAAATGTTCAGCTACATGGTGGCTTTGGCAGTAAGTCTGGCCCTGAAGTTCGGACAAGAA GAAACTCTCTCGAAAGCAATCAGCGTGTTCCTAGTCGTTATCATTTGCTTGTTTTGCTTTGCTTATGGAAGGTCTTGGGGTCCTCTAGGGTGGTTAGTTC CAAGCGAGCTCTTTCCATTGGAGACAAGGTCAGCTGGACAAAGTATTGTGGTCTGTGTCAACATGATCTTCACAGCATTGATAGCACAATGCTTTCTCGT GTCTCTCTGCCATCTTCGTTATGGGATTTTCTTGTTATTTGCTGCTTTGGTTGCCTTCATGGGCAGCTTCATCTTCTTTCTCCTGCCAGAAACAAAGCAA GTCCGAATAGAGGAGGTATACCTTCTCTTTCAAAACCATTGGTACTAG
AA sequence Show only first row Show all	>Potri.009G048500.1 pacid=42771572 polypeptide=Potri.009G048502.1.p locus=Potri.009G048500 ID=Potri.009G048500.1.v4.1 annot-version=v4.1 MAGGAFADGAALKGAHLYEYKTTIYFIPFWEYERKRRPLHKTDCCKYDNQILALFTSSLYLGPFKGRSASILCGSISFFCGAVINACAMNIAMLIIGRLL LGVGIGFSNQAVPLYQSEMSPAKTRILVANLVNYGTEKIHPWGWRLSLGSAVIPAVLMSVGAILLPETPNSLVEQEKLEEGRKILEEVRGTTNVDAEFAD LIDASNEAKAIKNPFRNLLRRKNRPQLIIGALGIPVFQQLTGMNSIYSSVVLGALLVGALTSMGLVDKFGRRTFFIEASIEMFSYMVALAVSLALKFGQE ETLSKAISVFLVVIICLFCFAYGRSWGPLGWLVPSELFPLETRSAGQSIVVCVNMIFTALIAQCFLVSLCHLRYGIFLLFAALVAFMGSFIFFLLPETKQ VRIEEVYLLFQNHWY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.009G048500 [exp]	0	1
AT4G02550			unknown protein		Potri.010G215600 [exp]	3.46	0.9400
AT3G50160			Plant protein of unknown funct...		Potri.016G039100 [exp]	7.93	0.9252
AT1G27170			transmembrane receptors;ATP bi...		Potri.011G012801 [exp]	10.19	0.9168
AT1G68820			Transmembrane Fragile-X-F-asso...		Potri.010G129932 [exp]	13.03	0.9332
AT4G25550			Cleavage/polyadenylation speci...		Potri.012G140301 [exp]	14.45	0.9051
AT1G27170			transmembrane receptors;ATP bi...		Potri.006G282100 [exp]	15.00	0.9160
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004166 [exp]	15.87	0.8938
					Potri.004G019766 [exp]	17.54	0.9029
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G444600 [exp]	18.97	0.8887
AT4G10780			LRR and NB-ARC domains-contain...		Potri.017G035300 [exp]	23.55	0.9096

Compare expression of checked genes

Potri.009G048500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.