Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13540 1190 / 0 ENS, CBP80, ABH1, ATCBP80 ENSALADA, CAP-BINDING PROTEIN 80, ABA HYPERSENSITIVE 1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005012 [exp] 1352 / 0 AT2G13540 1240 / 0.0 ENSALADA, CAP-BINDING PROTEIN 80, ABA HYPERSENSITIVE 1, ARM repeat superfamily protein (.1) Lus10019031 [exp] 729 / 0 AT2G13540 686 / 0.0 ENSALADA, CAP-BINDING PROTEIN 80, ABA HYPERSENSITIVE 1, ARM repeat superfamily protein (.1) Lus10019032 [exp] 556 / 0 AT2G13540 477 / 1e-163 ENSALADA, CAP-BINDING PROTEIN 80, ABA HYPERSENSITIVE 1, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02854 [poplar] [flax] MIF4G MIF4G domain CL0020 [poplar] [flax] TPR PF09088 [poplar] [flax] MIF4G_like MIF4G like CL0020 [poplar] [flax] TPR PF09090 [poplar] [flax] MIF4G_like_2 MIF4G like
Representative CDS sequence Show only first row Show all	>Potri.009G049200.1 pacid=42772381 polypeptide=Potri.009G049200.1.p locus=Potri.009G049200 ID=Potri.009G049200.1.v4.1 annot-version=v4.1 ATGAGCAGCTGGAGAAGTCTCCTTCTTCGAATCGGCGACAACTGCCCCGACTATGGCACCAGCTCCGACTTCAAAGAACACATTGAAACTTGCTTCGGTG TTATTCGGCGAGAGTTGGAGCACTCTTCTAACGATATTTTATCTTTCCTTCTCCAGTGTGCTGAACAGTTGCCTCACAAGATTCCTTTATATGGAACTTT GGTTGGCCTATTGAACTTGGAGAATGAGGACTTCGTGAAGCAAATGGTGGAGGCAACTCAAGCTAATTTTCAGGATGCCCTAGATTTTGGAAACTGTGAC ATGATTCGCATTTTGATGCGCTTTCTTACTGTTATGATGTGCAGTAAAGTTCTCCAACCTTCTTCTCTGGTAGTTGTCTTTGAAACACTCTTATCATCTG CTGCCACAACATTGGATGAAGAGAAAGGAAATCCTTCCTGGCAAGCCCGTGGGGACTTTTATGTAAGCTGCATTTTATCCTGTCTTCCATGGGGAGGATC AGAGCTTGTTGAGCAAGTTCCTGAGGAGATTGAGAGCGTCATGGTTGGTATAGAAGCTTATTTGAGCATTAGAAGGCATAATTCTGATACCGGATTGTCT TTTTTTGAGGATGATGATGAATCTGGGAGGGCTGTTGTTGAGAAGGATTTCTTGGAAGATTTATGGGGTCGGATTCAAGTACTATCTAGCAATGGATGGA AAGTAGACAGTGTACCCAGACCTCATCTCTCGTTTGAAGCTCAGCTGGTTGCTGGGAAGTCTCATGAGTTCGGGCCCATCAACACTCCTGAGCAACCTGA GCCACTTTCAGAAGTCTCTGGGGTACTTTATGGTAAACAGAAGCATGATGCAGAGTTAAAGTATCCTCAAAGGATACGCAGGCTTAATATATTTCCCGCG AGTAAAATTGAGGATATGCAACCCATAGATCGCTTCATTGTGGAAGAGTACTTGCTGGATGTACTTTTGTTCCTCAATGGATGTCGAAAGGAATGTGCTT CGTTCATGGTTGGCCTGCCTGTACCATTTCGTTACGACTATCTCATGGCAGAGACAATTTTCTCTCAGTTACTTTTGCTACCATTACCACCTTTCAAGCC AATATATTACACACTTGTGATAATGGACCTTTGTAAGGCTCTTCCTGGAGCCTTCCCTGGAGTTGTAGCTGGTGCAGTTCGTGCACTTTTTGAGAAAATA GCTGATTTAGATACGGAGTGTCAGACAAGGCTCATCCTTTGGTTTTCACACCATCTGTCAAACTTTCAATTCATCTGGCCATGGGAAGAGTGGGCTTTTG TTTTAGACCTACCTAAGTGGGCCCCACAGCGTGTGTTTGTTCAAGAGGTCTTGGAAAGAGAAGTCCGTCTGTCATACTGGGACAAAGTTAAGCAGAGCAT TGAGAATGCACCTGCTTTAGAAGAGTTGCTTCCACCAAAGGGTAGTCCAAACTTTATATACAGCATCGAAGATGGTAGAGAAAAAACTGAGCAGCATGCT TTGTCTGCAGAGCTCAACAACAAGGTGAAGGCAAGGCAAACTGCTCGAGAAATAATCTCATGGGTAGAAGAAAGTGTAGTTCCTAATCATGGTTGGGACG TCGCCCTTAAAGTGGTTGTACATACCCTTCTTGAAATCGGTTCTAAAAGTTTCACTCATTTGATCACTGTTTTGGAGAGATATGGCCAAGTATTTGCACG AATTTGTCCTGATCATGATAAGCAGGTCATGCTGATAGCTGAAGTTAGTTCATATTGGAAGAACAATGCTCAAATGACTGCCATAGCAATTGACAGAATG ATGGGTTATCGACTAATTTCTAATTTGGCAATTGTGAGATGGGTATTTTCTCCAGCAAACATTGAGCAATTTCATACATCTGATCGTCCATGGGAGGTTC TTAGAAATGCTATCAGCAAGACTTATAACCGTATATCTGATCTAAGAAACGAGATATCATCTCTTAAGAAGAGTGTTGTATCAGCTGAAGAAGCAGCGAC AAAGGCAAAAACAGAGTTAGATGCTGCTGAGTCAAAGCTCTCTCTTGTGGATGGTGAGCCTGTTCTTGGTGATAACCCTGCGAGGTTGAAGCGCTTGAAA GCAAATGCTGAAAAGGCAAAAGAAGAAGAGGTGTCTGTGCATGAGTCTTTGGAGGCCAAGGAGGCTCTTCTTGCTCGTGCCCTTGATGAAAATGAGGCAT TGTTCCTCTCTTTGTACAAAAACTTCTCAAATGTGTTGATGGAACGTCTACCTGATCCATCTAGAGCTCGAACATTGCGGGAATTAAAGTCAATTCAAGC AGATGAAATGACCGTTGATCTCGATGAATCATCAGTAATGGAAGTGGATAATGAGAGTGGGAGACCCAACAAAAGTCAGTCGAATGGAGGAAAGGAAAGC AACATCTATAATGTGGGAGAGAAAGAGCAATGGTGTTTATCAACTCTCGGCTATGTCAAGGCCTTTGCAAGACAGTATGCTTCTGAGATATGGGCTCACA TCGAGAAGCTAGATGCAGATGTATTCACAGAAAATGTGCATCCTCTTTTCAAGAAAGCAGTTTATTCTGGTTTGAGTCGGCCAATCAATGATGTGTCATC TGGCTAA
AA sequence Show only first row Show all	>Potri.009G049200.1 pacid=42772381 polypeptide=Potri.009G049200.1.p locus=Potri.009G049200 ID=Potri.009G049200.1.v4.1 annot-version=v4.1 MSSWRSLLLRIGDNCPDYGTSSDFKEHIETCFGVIRRELEHSSNDILSFLLQCAEQLPHKIPLYGTLVGLLNLENEDFVKQMVEATQANFQDALDFGNCD MIRILMRFLTVMMCSKVLQPSSLVVVFETLLSSAATTLDEEKGNPSWQARGDFYVSCILSCLPWGGSELVEQVPEEIESVMVGIEAYLSIRRHNSDTGLS FFEDDDESGRAVVEKDFLEDLWGRIQVLSSNGWKVDSVPRPHLSFEAQLVAGKSHEFGPINTPEQPEPLSEVSGVLYGKQKHDAELKYPQRIRRLNIFPA SKIEDMQPIDRFIVEEYLLDVLLFLNGCRKECASFMVGLPVPFRYDYLMAETIFSQLLLLPLPPFKPIYYTLVIMDLCKALPGAFPGVVAGAVRALFEKI ADLDTECQTRLILWFSHHLSNFQFIWPWEEWAFVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPKGSPNFIYSIEDGREKTEQHA LSAELNNKVKARQTAREIISWVEESVVPNHGWDVALKVVVHTLLEIGSKSFTHLITVLERYGQVFARICPDHDKQVMLIAEVSSYWKNNAQMTAIAIDRM MGYRLISNLAIVRWVFSPANIEQFHTSDRPWEVLRNAISKTYNRISDLRNEISSLKKSVVSAEEAATKAKTELDAAESKLSLVDGEPVLGDNPARLKRLK ANAEKAKEEEVSVHESLEAKEALLARALDENEALFLSLYKNFSNVLMERLPDPSRARTLRELKSIQADEMTVDLDESSVMEVDNESGRPNKSQSNGGKES NIYNVGEKEQWCLSTLGYVKAFARQYASEIWAHIEKLDADVFTENVHPLFKKAVYSGLSRPINDVSSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Potri.009G049200 [exp]	0	1
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Potri.013G000300 [exp]	3.16	0.8490	PHYC.1,phya
AT2G22400			S-adenosyl-L-methionine-depend...		Potri.007G096100 [exp]	4.24	0.8230
AT1G35460	bHLH	bHLH080	basic helix-loop-helix (bHLH) ...		Potri.019G079900 [exp]	4.24	0.8318
AT1G63500			Protein kinase protein with te...		Potri.003G126700 [exp]	10.58	0.8317
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154601 [exp]	22.22	0.7856
AT2G32000			DNA topoisomerase, type IA, co...		Potri.014G148800 [exp]	23.66	0.7420
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.001G185900 [exp]	27.74	0.8120
AT5G58003		CPL4	C-terminal domain phosphatase-...		Potri.018G108300 [exp]	28.26	0.7931
AT5G44170			S-adenosyl-L-methionine-depend...		Potri.001G148200 [exp]	29.54	0.8129
AT3G13690			Protein kinase protein with ad...		Potri.006G150100 [exp]	30.38	0.7975

Compare expression of checked genes

Potri.009G049200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.