Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CHLD.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08520 604 / 0 V157, ALB1, ALB-1V, PDE166, CHLD PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) AT5G45930 211 / 1e-60 CHLI-2, CHLI2 magnesium chelatase i2 (.1) AT4G18480 209 / 3e-60 CHLI-1, CHL11, CH-42, CH42, CHLI1 CHLORINA 42, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G063400 [exp] 218 / 3e-63 AT5G45930 605 / 0.0 magnesium chelatase i2 (.1) Potri.004G053400 [exp] 207 / 3e-59 AT5G45930 598 / 0.0 magnesium chelatase i2 (.1) Potri.001G254308 [exp] 178 / 3e-52 AT1G08520 160 / 1e-46 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Potri.001G254304 [exp] 153 / 4e-43 AT1G08520 120 / 3e-32 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019033 [exp] 634 / 0 AT1G08520 1163 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Lus10005013 [exp] 613 / 0 AT1G08520 1146 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Lus10025423 [exp] 211 / 1e-60 AT5G45930 638 / 0.0 magnesium chelatase i2 (.1) Lus10015302 [exp] 208 / 1e-59 AT5G45930 632 / 0.0 magnesium chelatase i2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01078 [poplar] [flax] Mg_chelatase Magnesium chelatase, subunit ChlI CL0128 [poplar] [flax] vWA-like PF13519 [poplar] [flax] VWA_2 von Willebrand factor type A domain
Representative CDS sequence Show only first row Show all	>Potri.009G049400.3 pacid=42771390 polypeptide=Potri.009G049400.3.p locus=Potri.009G049400 ID=Potri.009G049400.3.v4.1 annot-version=v4.1 ATGCCATTCTCTCCCACATCTCCTTCTTCTTCTTCTTCACTCTCTACCCTTCAATCTTCTACTCCTGCTCTTTTTTCTTCACTCAAACCACACTCCCATC TTTTTCCTACCTCTTCTTTTTCTTATGCTTTCAACCCCAAGAAAAGACTCTCCCACACTCGTCGTTTTCGCGTTGTTGCTGCAAATGTAACTCTCCAGTC TGGCAATGGTGCTGTTGCTGTTGATGCTACTCCTAATACTGCCACTGAGAAGCTGGACTCATCTTATTATGGAAGACAGTACTTCCCTTTAGCTGCTGTT GTTGGCCAGGATGCTATCAAAACTGCTCTTTTGCTTGGGGCTATTGACCGTGAGATTGGTGGGATTGCTATATCTGGAAAGCGAGGAACAGCCAAGACAG TTATGGCACGTGGGCTTCATGAAGTTTTGCCACCCATTGATGTAGTCATGGGTTCAATAGCAAATGCAGATCCAGTATGCCCTGAAGAGTGGGAGGATGG TTTGGCCGAACAAGTGGAATATGATTCCGATGGTAATATCAAGACCCAAGTTGTGAGATCTCCTTTCATTCAGATTCCTCTGGGAGTTACTGAGGATAGG CTCATTGGATCTGTTGATGTTGAGGAGTCCGTGAAAACAGGAACAACTGTCTTCCAACCTGGTCTTCTTGCTGAAGCTCATAGAGGTGTTTTATATGTTG ACGAAATTAATCTCTTGGATGAGGGTATAAGTAATTTGCTTCTTAATGTGTTGACCGAAGGAGTTAATATCGTGGAAAGAGAGGGAATCAGCTTTAGGCA TCCTTGCAAGCCACTTTTGATTGCTACTTATAACCCAGAAGAAGGTGCTGTTCGTGAACACTTATTAGATCGCATTGCTATTAATTTGAGCGCAGATCTT CCAATGAATTTTGAAGATCGTGTTGCAGCTGTTGGAATTGCAACACAATTTCAGGAACATATTAATGAAGTATTTAAAATGGTTGAGGAAGAAACCGAAT ATGCGAAGACCCAGATCATTTTGGCAAGGGAGTATTTGAAGGATGTTACTATTGGCAGGGAGCAATTGAAGTACCTTGTTTTGGAAGCCATTCGAGGTGG TTGCCAGGGACACAGAGCTGAGCTCTATGCTGCCCGTGTTGCAAAATGCCTGACTGCTTTAGAAGGACGTGAAAAAGTGACAGTGGATGACCTTAAGAAA GCTGTAGAACTGGTTATTCTTCCTCGTTCAATAATTAATGAGAAACCACCTGAGCAGCAAGACCAACAGCCTCCACCTCCACCACCTCCTCAAAATCAAG ATTCTGGGGATGAGCAGAATGAGGAGGAAGATCAAAAGGATGACGATAAAGAGAATGAACAACAGCAGGAACAAATACCTGAAGAATTCATCTTTGATGC GGAAGGAGGGTTCGTTGATGAGAAACTTCTCTTCTTTGCACAACAAGCACAGAGACGCCGAGGGAAGGCTGGGAGAGCAAAGAATGTGATATTTTCGGAG GACAGAGGACGGTATATTAAACCCATGCTCCCAAAGGGTCCTGTAAAGAGATTAGCGGTGGATGCAACCCTCAGGGCAGCTGCTCCATATCAAAAATTGC GTAAAGAGAAGGACACTCAAAAGAGTAGGAAGGTTTATGTTGAGAAAACTGACATGAGGGCAAAGAGAATGGCAAGAAAAGCCGGAGCACTGGTAATATT TGTGGTTGATGCTAGTGGGAGCATGGCATTGAATCGAATGCAAAATGCAAAAGGTGCAGCACTAAAGTTGCTTGCTGAGAGTTACACAAGCAGGGATCAG GTTGCTATTATTCCTTTCCGTGGAGATGCTGCTGAAGTTCTTTTGCCTCCTTCCAGATCAATTTCAATGGCAAGAAAGCGCCTTGAAAGGCTTCCATGTG GTGGTGGTTCTCCCTTAGCTCATGGCCTAACAACTGCTGTCAGGGTTGGGTTAAATGCAGAGAAGAGTGGTGATGTTGGACGCATAATGATTGTTGCAAT AACTGATGGCAGAGCCAATATATCACTAAAAAGGTCTACTGATCCCGAAGCTGCTGGTCCTGATGCTCCAAGACCTTCGACACAAGAATTGAAGGATGAG ATTCTTGAAGTGGCTGGGAAAATATACAAGGCAGGGATGTCACTCCTCGTCATTGACACAGAAAACAAGTTCGTTTCAACTGGTTTTGCTAAAGAAATCG CAAGAGTTGCTCAAGGAAAATACTATTACTTGCCAAATGCATCAGACGCAGTTATTTCAGCCACAACGAAAGAAGCTTTATCAGCCTTGAAGAGTTCATG A
AA sequence Show only first row Show all	>Potri.009G049400.3 pacid=42771390 polypeptide=Potri.009G049400.3.p locus=Potri.009G049400 ID=Potri.009G049400.3.v4.1 annot-version=v4.1 MPFSPTSPSSSSSLSTLQSSTPALFSSLKPHSHLFPTSSFSYAFNPKKRLSHTRRFRVVAANVTLQSGNGAVAVDATPNTATEKLDSSYYGRQYFPLAAV VGQDAIKTALLLGAIDREIGGIAISGKRGTAKTVMARGLHEVLPPIDVVMGSIANADPVCPEEWEDGLAEQVEYDSDGNIKTQVVRSPFIQIPLGVTEDR LIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVLTEGVNIVEREGISFRHPCKPLLIATYNPEEGAVREHLLDRIAINLSADL PMNFEDRVAAVGIATQFQEHINEVFKMVEEETEYAKTQIILAREYLKDVTIGREQLKYLVLEAIRGGCQGHRAELYAARVAKCLTALEGREKVTVDDLKK AVELVILPRSIINEKPPEQQDQQPPPPPPPQNQDSGDEQNEEEDQKDDDKENEQQQEQIPEEFIFDAEGGFVDEKLLFFAQQAQRRRGKAGRAKNVIFSE DRGRYIKPMLPKGPVKRLAVDATLRAAAPYQKLRKEKDTQKSRKVYVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQ VAIIPFRGDAAEVLLPPSRSISMARKRLERLPCGGGSPLAHGLTTAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEAAGPDAPRPSTQELKDE ILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTKEALSALKSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Potri.009G049400 [exp]	0	1	CHLD.1
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.001G351400 [exp]	2.23	0.9528
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Potri.005G091600 [exp]	2.44	0.9419
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.016G078600 [exp]	7.14	0.9399
AT3G59780			Rhodanese/Cell cycle control p...		Potri.013G128300 [exp]	7.48	0.9282
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Potri.019G048900 [exp]	8.71	0.9395
AT1G03160		FZL	FZO-like (.1.2)		Potri.005G209200 [exp]	10.58	0.9282
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.017G072800 [exp]	13.07	0.9263
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.012G080400 [exp]	14.00	0.8889
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.001G279100 [exp]	14.83	0.9263	F2KP.3
AT1G72640			NAD(P)-binding Rossmann-fold s...		Potri.003G063800 [exp]	17.02	0.9352

Compare expression of checked genes

Potri.009G049400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.