Plant FIBer expression Database

TTN9.1 (Potri.009G049500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol TTN9.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G20070 187 / 8e-58 TTN9 titan9 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026248
[exp]
258 / 9e-84 AT3G20070 140 / 5e-39 titan9 (.1.2)
Lus10042422
[exp]
198 / 4e-58 AT4G32140 390 / 3e-130 EamA-like transporter family (.1)
PFAM info
Representative CDS sequence
>Potri.009G049500.2 pacid=42772075 polypeptide=Potri.009G049500.2.p locus=Potri.009G049500 ID=Potri.009G049500.2.v4.1 annot-version=v4.1
ATGGAGGATTTGTATAAAAAACTCTACGCTAAGTACGATAAGCTTAAGAAGAAACAATTGTCAGAGTTTGATGAGCTCAACAAAGATCAAGAAGTCAAGT
TTTTGAATTATGCCTCTGTTGCTGAAGAGATGATACAATACTTGAAAGATGAAAATGACAGGTTGCGTAAACAAGCCAGTGATTTGAGAAGTGAAGCTGC
TTCAATCAGGTCCACCATGGATGAACAATGTGCCGAGTACCAGAAGCTCTTAATGGAAGAGAACCAGAAAAATAAAATTCTTAATGAAGAAGTTGAGAAG
CTTCAAAACCAGCTTCAATATGGACTTCCTTGCAATTCTAAGGACGGAAACAATGATAATGTCCAGCTGAATATGCTTGAAACTGCACAAGTTACACCAG
AAGAGAGATCCATTGCCTCAACTAGAAGAATGGTGAGAAAACGTAACCGAGAAGCTAGGGAGAAAATGGAAGAAGAAATTACCCATGGTGGTAATGATAT
AGTTGGATACAATGATATGGAAGAAAAATCTGCCAAGCGCTCATCCAAGGGAACTGTTTCCCGTGGGGATCTTCCAAATGATCAGCAGCTAGAATCCTGT
GAAAGAATTTTATACAGATCAGCTGAAAGTGGCCCTGCTAACTTCCAGTTTCAAGCTCTTCTAGAATACCTAGTAGGCATGAAATTGTCTGCTGTTAATC
AAAATGATGAAGTTTGCATTTCAGCTCTGCATCAATCAAGTGGTTTTGCATTTACTCTAACATGGATGAAGAACGAAGCTGTAGAGGAACCAGAGCTGTT
ATATCGTGTGTTAACATTAGGTACATTTGAGAGGGTAGCGCCAGAGTGGATGCGATCGGTCCTGATGTTCAGCATGAGAATGTGGCCAATCTTCTTTGAA
AGATTAGCCTGTGTGATCAAGCTCCATCGCTGA
AA sequence
>Potri.009G049500.2 pacid=42772075 polypeptide=Potri.009G049500.2.p locus=Potri.009G049500 ID=Potri.009G049500.2.v4.1 annot-version=v4.1
MEDLYKKLYAKYDKLKKKQLSEFDELNKDQEVKFLNYASVAEEMIQYLKDENDRLRKQASDLRSEAASIRSTMDEQCAEYQKLLMEENQKNKILNEEVEK
LQNQLQYGLPCNSKDGNNDNVQLNMLETAQVTPEERSIASTRRMVRKRNREAREKMEEEITHGGNDIVGYNDMEEKSAKRSSKGTVSRGDLPNDQQLESC
ERILYRSAESGPANFQFQALLEYLVGMKLSAVNQNDEVCISALHQSSGFAFTLTWMKNEAVEEPELLYRVLTLGTFERVAPEWMRSVLMFSMRMWPIFFE
RLACVIKLHR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G20070 TTN9 titan9 (.1.2) Potri.009G049500
[exp]
0 1 TTN9.1
AT3G19184 B3 AP2/B3-like transcriptional fa... Potri.007G042500
[exp]
2.82 0.7095
AT1G68000 ATPIS1 phosphatidylinositol synthase ... Potri.004G175600
[exp]
12.20 0.7183
AT3G60510 ATP-dependent caseinolytic (Cl... Potri.014G057400
[exp]
26.87 0.6071
AT2G43810 Small nuclear ribonucleoprotei... Potri.008G078400
[exp]
29.94 0.6920
AT5G25450 Cytochrome bd ubiquinol oxidas... Potri.006G250000
[exp]
38.98 0.6386
AT5G14140 C2H2ZnF zinc ion binding;nucleic acid ... Potri.001G329300
[exp]
41.49 0.6277
AT3G54170 ATFIP37 FKBP12 interacting protein 37 ... Potri.002G197600
[exp]
44.42 0.5338 ATFIP37.1
AT1G61700 RNA polymerases N / 8 kDa subu... Potri.006G136300
[exp]
47.74 0.6056
AT4G23760 Cox19-like CHCH family protein... Potri.003G136500
[exp]
50.49 0.5964
AT1G73820 Ssu72-like family protein (.1) Potri.015G036600
[exp]
56.12 0.5906

Potri.009G049500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.