Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12410 419 / 2e-146 THUMP domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G254600 [exp] 615 / 0 AT5G12410 416 / 4e-145 THUMP domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005018 [exp] 441 / 8e-155 AT5G12410 415 / 9e-145 THUMP domain-containing protein (.1) Lus10019037 [exp] 441 / 9e-155 AT5G12410 410 / 8e-143 THUMP domain-containing protein (.1) Lus10023158 [exp] 42 / 0.001 AT1G09290 325 / 4e-109 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02926 [poplar] [flax] THUMP THUMP domain
Representative CDS sequence Show only first row Show all	>Potri.009G049700.1 pacid=42771595 polypeptide=Potri.009G049700.1.p locus=Potri.009G049700 ID=Potri.009G049700.1.v4.1 annot-version=v4.1 ATGGCAACGGAGAACAAGCCGAAGTCCAGAGCTAGTGCTACTACCAACAGCAAGAAGAGAAAGCAACACTATCTCCCTCACAATAAACCAGTGAGGAAGA AAGGTTCCTACCCGTTACACCCAGGAGTTCAAGGCTTCTTTATCACTTGTGATGGGGGTAGGGAGCGCCAAGCCTCTCGTGAGGCTATTAACGTTATTGA TTCTTTTTATGAAGAGCTAGCTTATGGGAAGGATACTAGTGTGAAGCTTGCAGATTTCCCTGATAAACCTACAAATAAAAAGATCAAGTTCTCATATTCT GACGATGAAGGAGATGGCGAAGAGGATGATGATGAAGAAGATGGGGAAGATGAGAACAAATCAGAAGCCCCTGAAGGCAATGATGCCATGAATGATAATC CTACAGACAAAAAGGTAGGATCACCTACTGTAGAAAATGAAAACAGTGAAAATCAAACAGAAGAGAAGACTAATCAAGAAGAGGGTTGTAAAAATGATGA AAAACAAGCAAATGAAGCAGAGGGGCCACCAGCAAAGAAGAAATGCACAGAAACATGTGCCCCAAAGACTGTTGTCCAAGAAAAAGTGGAGGAGAAATCC ATTGATAGGCTTATTGAGGATGAACTCAAAGAACTTGGAGATAAGAACAAGAGGCGCTTTCTCAGCCTTGATTCTGGTTGTAATGGTGTTGCCTTTATTC AAATGCGCAAGATAGATGGAGACCCTTGTCCCAAAGATATTGTCCAACATATAATGACATCTGCTGCGTCAACAAGGAAACACATGTCCAGGTTCATCAT AAGAATGCTACCAATTGAAGTTGCATGCTATGCTTCAGAAGAGGAAATCTCAAGAGCGATTGCGCCAGTTGTTGAAAAATATTTTCCTGTGGATACTCAG GATCCACTGAAGTTTGCAGTAATGTATGAAGCCCGTGCAAATTCTGGCATTGACAGGATGAAAATTATAAATTCAGTGGCAAAATCTGTTCCTGGACCTC ATAAAGTTGATCTTGGCAATCCTGACAAGACAATTGTAGTTGAAATTGTCAAGACTGTGTGCTTGATCGGGGTTATTGAAAAGTACAAGGAGTTGTCCAA GTACAACTTGAGGCAGCTCACATCATCGAAGCAGTAA
AA sequence Show only first row Show all	>Potri.009G049700.1 pacid=42771595 polypeptide=Potri.009G049700.1.p locus=Potri.009G049700 ID=Potri.009G049700.1.v4.1 annot-version=v4.1 MATENKPKSRASATTNSKKRKQHYLPHNKPVRKKGSYPLHPGVQGFFITCDGGRERQASREAINVIDSFYEELAYGKDTSVKLADFPDKPTNKKIKFSYS DDEGDGEEDDDEEDGEDENKSEAPEGNDAMNDNPTDKKVGSPTVENENSENQTEEKTNQEEGCKNDEKQANEAEGPPAKKKCTETCAPKTVVQEKVEEKS IDRLIEDELKELGDKNKRRFLSLDSGCNGVAFIQMRKIDGDPCPKDIVQHIMTSAASTRKHMSRFIIRMLPIEVACYASEEEISRAIAPVVEKYFPVDTQ DPLKFAVMYEARANSGIDRMKIINSVAKSVPGPHKVDLGNPDKTIVVEIVKTVCLIGVIEKYKELSKYNLRQLTSSKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12410			THUMP domain-containing protei...		Potri.009G049700 [exp]	0	1
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Potri.002G255300 [exp]	4.00	0.8498
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.001G044700 [exp]	7.74	0.7949
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.009G079700 [exp]	8.94	0.7888
AT3G10110		MEE67	maternal effect embryo arrest ...		Potri.001G281200 [exp]	9.48	0.7914
AT5G17370			Transducin/WD40 repeat-like su...		Potri.001G075300 [exp]	13.63	0.7470
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.010G053400 [exp]	15.62	0.8141
AT3G12300			unknown protein		Potri.003G193900 [exp]	17.66	0.7411
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Potri.004G224400 [exp]	18.33	0.7889	Pt-HSC70.1
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.012G022400 [exp]	22.31	0.7962	Pt-HSP21.3
AT2G46230			PIN domain-like family protein...		Potri.002G166200 [exp]	23.91	0.7309

Compare expression of checked genes

Potri.009G049700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.