Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50460 575 / 0 ATHKL1, HKL1 hexokinase-like 1 (.1) AT3G20040 557 / 0 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1) AT4G29130 450 / 8e-155 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT2G19860 444 / 4e-152 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT1G47840 374 / 7e-125 HXK3 hexokinase 3 (.1) AT4G37840 253 / 4e-78 HKL3 hexokinase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G254800 [exp] 741 / 0 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.018G088300 [exp] 468 / 2e-161 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.001G190400 [exp] 446 / 4e-153 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.005G238600 [exp] 404 / 8e-137 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.007G009300 [exp] 298 / 1e-95 AT4G37840 520 / 0.0 hexokinase-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019038 [exp] 644 / 0 AT1G50460 636 / 0.0 hexokinase-like 1 (.1) Lus10005019 [exp] 644 / 0 AT1G50460 670 / 0.0 hexokinase-like 1 (.1) Lus10038287 [exp] 443 / 5e-152 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10012946 [exp] 440 / 1e-150 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10037588 [exp] 436 / 4e-149 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10006843 [exp] 434 / 3e-148 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10025815 [exp] 420 / 2e-141 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10024336 [exp] 407 / 8e-138 AT1G47840 646 / 0.0 hexokinase 3 (.1) Lus10002041 [exp] 402 / 8e-136 AT1G47840 643 / 0.0 hexokinase 3 (.1) Lus10011584 [exp] 210 / 5e-62 AT4G37840 374 / 1e-125 hexokinase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00349 [poplar] [flax] Hexokinase_1 Hexokinase CL0108 [poplar] [flax] Actin_ATPase PF03727 [poplar] [flax] Hexokinase_2 Hexokinase
Representative CDS sequence Show only first row Show all	>Potri.009G050000.1 pacid=42770878 polypeptide=Potri.009G050000.1.p locus=Potri.009G050000 ID=Potri.009G050000.1.v4.1 annot-version=v4.1 ATGGGGAAGTTGGCGGCGGGATTGGCGGCGGCTGCGGCGGTGGCGGCTTGTGCGGTGGCAGGAGTGGTGGTGGGGAGGAGGGTACGGAGTAGGAGGAAGT GGAAGAGAGTGGTAGGAGTGTTGAGAGAGTTAGAAGAAGCATGCGAGACACCAGTTGGGAGGTTAAGGCAAGTAGTGGATGCTATGGCTGTGGAGATGCA CGCTGGTTTGGCGTCTGAAGGTGGCTCGAAGCTTAAAATGTTACTCACTTTTGTTGACCATTTGCCTACGGGGAGTGAGATAGGAACTTATTATGCTCTA GATCTTGGGGGTACTAATTTTAGGGTCTTGCGGGTTCAGCTAGGAGGTAGAAGATCTTCAATCTTGTCTCAAGATGTGGAGCGACGACCCATTCCCCGGC ACTTGATGACAAGCACAAGTGAGGATCTCTTTGATTTTATTGCTTCAACCTTAAAGCAATTCGTTGAAAAAGAAGAAAGTGGTTCTGAGCCTTCTTCAGT TAGAGCAAGGGAGCTTGGGCTTACATTTTCTTTTCCAGTGAAACAATTGTCTATTCGTTCAGGTATCCTTATGAAATGGACAAAAGGATTTGCCATTGAA GATATGGTTGGAAAAGAGGTGGTTGGACTTTTAGAAGCAGCGTTAGTCAGGAGTGGTTTAGATATGCGCGTTGCAGTATTGGTAAATGATACTGTGGGAA CCTTAGCACTTGGACATTATGATGATGCTGACACTGTTGCTGCTGTGATAATTGGAACGGGTACTAATGCCTGTTATCTAGAGCGGGCAGATGCCATCAT AAAGTGTCAAGGTCTTCTTACAACTTCAGGATGCATGGTTGTTAACATGGAATGGGGAAATTTTTGGTCATCCCATTTGCCAAGAACTTCTTATGATATT GATTTGGATTTGGAAAGCCCTAACCCAAATGATCAGGGTTTTGAGAAAATGATATCAGGAATGTATCTAGGTGACATTGTTCGGAGAGTTATTCTAAGAA TGTCGCAAGACTCGGATATATTTGGACCTGTTTCCTCCAGATTATCAATCCCCTTTATTTTGCAAACACCTTTGCTGGCTGCAATGCATGAGGACGACTC TCCTGAACTGAAAGAAGTAGATAAGATCTTGAAAGAAACCCTGGAGATTTCAGAGGTCTCTTTGAAGGTCCGAAAGCTTGTTGTAAGAGTATGTGACGTT GTGACCCGTAGGGCTGCTCGATTGGCAGCTGCTGGCATAGTGGGAATCTTGAAGAAGATCGGACGGGATGGAAGTGGAGGCGTCACTGGTGGAAGAAGTA GAAGTGATGTAAAAATGAGAAGAACAGTTGTTGCGATTGAAGGGGGTTTATATACAAGTTATACAATGTTCAGAGAGTACTTGCATGAAGCCCTGAATGA AATATTGGGAGAAGATGTGGCCCACCATGTCATTCTTAAAGTTACAGAAGATGGATCAGGCACTGGCGGAGCTCTCCTTGCTGCCGCATATTCATCCGGC AGTGTGGATAACGTACAGTCGCTATAA
AA sequence Show only first row Show all	>Potri.009G050000.1 pacid=42770878 polypeptide=Potri.009G050000.1.p locus=Potri.009G050000 ID=Potri.009G050000.1.v4.1 annot-version=v4.1 MGKLAAGLAAAAAVAACAVAGVVVGRRVRSRRKWKRVVGVLRELEEACETPVGRLRQVVDAMAVEMHAGLASEGGSKLKMLLTFVDHLPTGSEIGTYYAL DLGGTNFRVLRVQLGGRRSSILSQDVERRPIPRHLMTSTSEDLFDFIASTLKQFVEKEESGSEPSSVRARELGLTFSFPVKQLSIRSGILMKWTKGFAIE DMVGKEVVGLLEAALVRSGLDMRVAVLVNDTVGTLALGHYDDADTVAAVIIGTGTNACYLERADAIIKCQGLLTTSGCMVVNMEWGNFWSSHLPRTSYDI DLDLESPNPNDQGFEKMISGMYLGDIVRRVILRMSQDSDIFGPVSSRLSIPFILQTPLLAAMHEDDSPELKEVDKILKETLEISEVSLKVRKLVVRVCDV VTRRAARLAAAGIVGILKKIGRDGSGGVTGGRSRSDVKMRRTVVAIEGGLYTSYTMFREYLHEALNEILGEDVAHHVILKVTEDGSGTGGALLAAAYSSG SVDNVQSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Potri.009G050000 [exp]	0	1
AT3G57550		GK-2, AGK2	GUANYLATE KINAS 2, guanylate k...		Potri.006G053400 [exp]	4.58	0.6366	AGK2.1
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.004G205000 [exp]	12.24	0.6382
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Potri.002G098000 [exp]	15.65	0.6225
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.014G035100 [exp]	15.84	0.6393
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.015G023200 [exp]	18.00	0.5927
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.005G247700 [exp]	23.45	0.6288
AT1G03220			Eukaryotic aspartyl protease f...		Potri.005G095600 [exp]	30.16	0.6015
AT1G12460			Leucine-rich repeat protein ki...		Potri.003G117500 [exp]	31.87	0.6322
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G061500 [exp]	35.69	0.5896
AT5G66270	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G115901 [exp]	42.42	0.5706

Compare expression of checked genes

Potri.009G050000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.