Plant FIBer expression Database

Potri.009G050100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G50450 608 / 0 Saccharopine dehydrogenase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027349
[exp]
642 / 0 AT1G50450 611 / 0.0 Saccharopine dehydrogenase (.1)
Lus10014913
[exp]
636 / 0 AT1G50450 609 / 0.0 Saccharopine dehydrogenase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF03435 Sacchrp_dh_NADP Saccharopine dehydrogenase NADP binding domain
Representative CDS sequence
>Potri.009G050100.2 pacid=42772175 polypeptide=Potri.009G050100.2.p locus=Potri.009G050100 ID=Potri.009G050100.2.v4.1 annot-version=v4.1
ATGGCATTTGTAATGATAGCCAGACAAGCTCTGTTTCAGTTGAAGAGCAGCACGAGTGTAAAGGCTTGCGTTAAAGAGTGTAAACATGATAATTCTAACA
GCAACGTTGTTCAACTTCCTGAGAAGACTCGCAACTCAAGCGTTCTTGTACTGGGTGGAACGGGTCGGGTCGGTGGGTCCACTGCCACTGCTCTCTCCAA
GTTCTGCCCTGACCTTAGAATTGTGATTGGTGGTCGAAACAGGGAAAAAGGTGCTGCGATGGTGGGTCAATTGGGGAGGAACTCCGAGTTCACTGAAGTC
AACATTGAGAATGTAGACTCATTGGGAGCAGCTCTGAAAGATGTAGATCTTGTCGTTCATGCTGCAGGGCCTTTTCAACAGGCAGCGAAATGCACTGTAC
TTGAAGCTGCCATAGAGACCAAGACAGCATATGTTGATGTTTGTGATGATACAAGCTATGCATTGCGTGCAAAGTCCTTCAAGGATAAAGCCTTAGCTGC
AAATATTCCTGCCATAACAACTGGTGGAATCTATCCAGGAGTGAGCAATGTCATGGCAGCAGAGCTAGTACGTGCTGCGAAAACTGAAAGCAAGGGAAAG
CCCGAGAGGCTGAGGTTCTACTACTATACAGCAGGCAGTGGTGGTGCTGGTCCAACCATACTAGCTACTAGTTTCTTACTTCTTGGTGAGGAGGTTGTTG
CATATAATAAGGGAGAAAAGATCAAACTAAAGCCATATAGTGGAATGCTTAACATCGACTTTGGAAAGGGGATCGGAAAGCGAGATGTTTACCTGTTGAA
TTTACCTGAAGTTCGAAGTGCTCATGATGTCCTAGGAATACCAACAGTCAGTGCTCGATTTGGAACTGCACCATTCTTTTGGAATTGGGGAATGTCAGCC
ATGACAAATCTTCTGTCTCCAGAATTTCTGAAGGACAGGACCAAAGTCCAACAGTTGGTTCAGTTGTTTGACCCTCTAGTCCGAGCAGTTGATGGGATTG
CTGGAGAGCGTGTTTCAATGAGGGTTGATTTGGAGTGCACAGATGGGCGCAATACACTTGGTTTATTTAGTCACCGGAAACTCTCCGTTTCTGTGGGAAA
TGCAACAGCTGCTTTTGCTCTTGCAGTTCTTGAAGGTAGCACGCAACCAGGGGTCTGGTTTCCCGAAGAGCCTGAAGGAATTGCAATTGAGGCAAGAGAA
CTTCTTCTGAATCGTGCAACAGAAGGAACGATTAATTTTATAATGAACAAGCCACCTTGGATGGTGGAAACAGACCCAAAAGAGCTTGGATTGGGAATAT
ACGTGTGA
AA sequence
>Potri.009G050100.2 pacid=42772175 polypeptide=Potri.009G050100.2.p locus=Potri.009G050100 ID=Potri.009G050100.2.v4.1 annot-version=v4.1
MAFVMIARQALFQLKSSTSVKACVKECKHDNSNSNVVQLPEKTRNSSVLVLGGTGRVGGSTATALSKFCPDLRIVIGGRNREKGAAMVGQLGRNSEFTEV
NIENVDSLGAALKDVDLVVHAAGPFQQAAKCTVLEAAIETKTAYVDVCDDTSYALRAKSFKDKALAANIPAITTGGIYPGVSNVMAAELVRAAKTESKGK
PERLRFYYYTAGSGGAGPTILATSFLLLGEEVVAYNKGEKIKLKPYSGMLNIDFGKGIGKRDVYLLNLPEVRSAHDVLGIPTVSARFGTAPFFWNWGMSA
MTNLLSPEFLKDRTKVQQLVQLFDPLVRAVDGIAGERVSMRVDLECTDGRNTLGLFSHRKLSVSVGNATAAFALAVLEGSTQPGVWFPEEPEGIAIEARE
LLLNRATEGTINFIMNKPPWMVETDPKELGLGIYV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G50450 Saccharopine dehydrogenase (.... Potri.009G050100
[exp]
0 1
AT5G52440 HCF106 HIGH CHLOROPHYLL FLUORESCENCE ... Potri.012G144300
[exp]
3.46 0.9673 Pt-HCF106.2
AT2G35500 SKL2 shikimate kinase-like 2, shiki... Potri.003G096600
[exp]
5.47 0.9543
AT5G01920 STN8 State transition 8, Protein ki... Potri.016G138500
[exp]
6.92 0.9626
AT2G33180 unknown protein Potri.001G053700
[exp]
8.94 0.9610
AT1G35340 ATP-dependent protease La (LON... Potri.013G105500
[exp]
9.59 0.9630
AT5G57030 LUT2 LUTEIN DEFICIENT 2, Lycopene b... Potri.006G147300
[exp]
9.89 0.9589
AT1G52220 unknown protein Potri.001G184700
[exp]
10.95 0.9596
AT1G78010 tRNA modification GTPase, puta... Potri.002G092600
[exp]
11.13 0.9340
AT5G19940 Plastid-lipid associated prote... Potri.006G276400
[exp]
12.64 0.9612
AT1G14030 Rubisco methyltransferase fami... Potri.008G090500
[exp]
15.23 0.9584 RBCMT.1

Potri.009G050100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.