Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12430 821 / 0 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G41520 576 / 0 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT4G02100 104 / 7e-23 Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT1G02650 103 / 1e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65160 103 / 3e-22 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT3G62570 95 / 1e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42580 94 / 2e-19 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT2G47440 93 / 5e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G58620 91 / 2e-18 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT1G78120 90 / 3e-18 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G255000 [exp] 1953 / 0 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.016G043900 [exp] 673 / 0 AT2G41520 612 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.006G047700 [exp] 661 / 0 AT2G41520 640 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.007G091200 [exp] 106 / 2e-23 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G094800 [exp] 106 / 2e-23 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G076800 [exp] 104 / 1e-22 AT5G65160 619 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G197300 [exp] 102 / 4e-22 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.005G166300 [exp] 99 / 1e-20 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.014G122300 [exp] 98 / 1e-20 AT4G02100 637 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019041 [exp] 1011 / 0 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10005022 [exp] 1005 / 0 AT5G12430 791 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10035427 [exp] 573 / 0 AT2G41520 635 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10031042 [exp] 467 / 5e-144 AT2G41520 505 / 4e-160 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10031041 [exp] 133 / 9e-36 AT2G41520 128 / 5e-35 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10022500 [exp] 95 / 1e-19 AT5G65160 652 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10002438 [exp] 94 / 2e-19 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10016804 [exp] 92 / 9e-19 AT5G65160 635 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10042854 [exp] 90 / 7e-18 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10028154 [exp] 89 / 2e-17 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.009G050200.1 pacid=42771911 polypeptide=Potri.009G050200.1.p locus=Potri.009G050200 ID=Potri.009G050200.1.v4.1 annot-version=v4.1 ATGAATCCATCAAATTTTGGTAATTTAAATTCCGGGTTTTCAAACTCAACCCAATTTAGCAACCAAGATCCAAACTTTAGCTCTCGATCATCGTCAGCCA AAGGTGGTCTTTCGAGGCCAAGATTGGTAAAAGTTAGGAGGCAATCAAATCCCCAGAACTTTAATGCCAATGAAGATATCTGGGCTAGGTCTGGTTTCAA TCCGTTTCGACCTGATACGAGTCGTGTTGAACTGGGCGGTTCTGGTTCAACTGGGTTTGATTCTGGGAGTGGTGGTAATGAGGCGTTTTTGTTTGGAGCT AGTGGAAGTAATGTGGGTTTTAATTCGGATTCCAGCAAGGGAATTATAGAGGACTTGAAAAGTTTGAGAATTGGAGGTGGAACTAATGTAAATGAGAATG ATAAGAGTGGTTTTGTTTTTTCGAGTGATGGTAATAAGAGTTTTGGTGTTGATGAGAGCATGCAGAAGCTGAGCATTGATGATAAGGAGAAAGTTGTAGA TGGAGAGTCTAAGTTAAGTGCAAATGCTAGGTTTGAGAGTGGTGACAATGTAGGCGGTTCTATTGGGAGAAATGTGGGGTCAGTGCTATCAGATGAGTTA GAGAAGAAATTGAATATTGAAGAGGCCGGGGATGCCACTAATGGTGGTGGTAGTTTTCGAGCTGAAGATATCAAAAAGTTTGGATTAAAAAGTAGTGAAA AGCGTAGTGATATTTTTGCTGATGCTTCAGAGAATGCACTTCCTGATCGGATCAAGAAATTGAGCATAAGGGACTTTGTAGATACTTATAATGTAAACAA TGAGAAGGATAGCTTTGCTTTTGGAAGCAGGGAAAGCACTGGCGGTTATGTGGGTGGAGAAAATGAGAGTATACTTTCACGTGAGAGGGGTTGCAAGTTG AACCTCGGAAGTGTGAAGGGAGAATATTCAAGTCAAACTGACATGAGATTTTCTTCATCACGAATCTTCATGCCAACTGTAAATAAGGGGGATGAGAAAT TCCATGATTGTGGTGATCCAACGGAATTTGTTTTTGAAGGAGGAATGCTGGGTACAGATGTTGGTGGCTTTCAAGTACCTATAGATCAACCAAAAGTCGA TGCACAACCAATTGGAGTTGCAGGGCCATCGCATGCCTTCTCATCCAGTAGCTTGGCTGGTGGGAATGCGTTCAGGGTGCCACCTACTGGTGGACTTGAG AAGACAGATTGGTTTAGTTTTACAAGCAAGCAAGACAGTGCTGGGTCTCTATTTGTAGAATTTGAAACACCAAATCCCAAAGGATATATTTTCACAGGAT CAAATCCGACAATGGAATTCAGTACGATGTTTAAAGACTTGAAAGTGAAGAAGAAAAGGGGAAAGTTGAGCCAACCTGTCAAAGTCCCTCTGTGGCCAGG TCAAGATTTTGTTGATAGGGAAGGTGGTTCAAAAGAAATTCCAGAGGCTTCCGAATCTTATTCACCAATGGATATTTCACCATACCAGGAAACATTGTCT GATGCTCGAAATTCCAGGGAAACTTCTGTTGCATCGGAGGAATCTTTCACTCTGGATAATCAACATCAATCAACTGATTCACAACCAGCTGTTCTGAATG ATGCAATAGATGAAGATCTGGTTGTTGCAACACAGCAAATGGATAATGAAGAGGATACGAAATACGGAGAAACTAAAGAGCAAAACTCTGAATACTGTTC TGATAAAAATATTGGAGCTGAAAATTATCTGGAAGAGTCTATTTCTGGGGCTGAAACTGAAAGCTTTAAATCTGCAAATGAGGAAATAGATTCTATCAAT GATGTTATGGTTGCTTCAGCAGAAAGTGAAGCCAGTTCAAGTGCAAATCTAGATAGTGACCTCAGGACACAATTTTTTTCAGCTGTGAGTTCAGAAGATG CTGTGAGTTCGGGCTTCACCTTTGCTGCCTCTTCTACTGCACAAGCATCTCCAAAACGTCATCACAAAAAGAAGAATCTGGCTAAAGTTGATAATGATTC CTTCAATTCCAGTGCTAATTCCAAAGGTTCATATGCATCATCTTCTTTGCAATTTACACCATTTTCTGGACCATCTTCACCCTTGTCCCCTGTACGGAGC AAGAAAGCTGGCTCATCTGGTCCTTCACATGTGGTTGGGGATACCCGTGAGCTGCTTAGAGGACAGGAGATTAATCAAGGGTCTGTTTCTGCATCTGTTG CAGCTCAAGAAGCATGTGAGAAGTGGCGAATAAGGGGAAACCAAGCATACACTAGCGGGGATTTGTCTAAAGCTGAGGATTGTTACACAAAAGGTGTAAA TTGTGTTTCTAAAACTGAGACATCTAGAAGCTGTCTCAGGGCATTGATGTTGTGCTATAGCAACCGTGCGGCTACCCGTATGTCTCTTGGAAGAATGAGA GACGCACTATTAGACTGTAAGATGGCTGCTGCAATTGATCCCAATTTTCTCAGGGTGCAAGTCAGAGCTGCAAATTGTTACCTTGCTCTGGGGGAAGTTG AAGATGCAGTGCAATATTTCAAGAGGTGCTTACGGTTAGGCATTGATGTCCGTGTGGACCAAAAAACTGCTGTAGAAGCCTCTGACGGGCTGCAAAAGGC ACAGAAAGTGTCTGAGTGCATGCAACATGCTGCTCTACTTCTGAAACGGGGAGCACCTAATGATGCAGAGAGTGCTTTACAAGTAATTGCTGAGGGGTTG TTGATAAGTTCGTATTCTGAAAAATTACTTGAAATGAAAGCAGAGTCACTTTTCATGCTGCGGAAGTATGAAGAGTTAATTCAACTGTGTGAGCATACAT TTGATTCTGCTAAGAAGAATTCTCCTCCATTACATGCTGATTACCATGTAGAAAATCTTGGTCCTGAACTCACAAAGGGCACTTCCTTTATGATCTGGCG ATGCCGCTTCATTTTCAAGTCTTACTTCCATCTTGGAAGACTGGAGGAGGCTATTGTTTCGCTAGAAAAGCAAGAGGAACTTACTTCTATTGCAAGGAGT AGTCTGTCCAGGAATGATATTGAAACACAGGAATCACTAGTACCCTTAGCTGCCACTGTACAAGAACTCTTACGCCATAAGGCAGCAGGGAATGAAGCAT TTCAAGCAGGAAAGCATTCAGAAGCTATTGAACATTACAGTGCTGCTCTGTCCCGTAACATAGAATCACGGCCTTTTGCAGCCATTTGTTTTTGCAATAG AGCTGCTGCATACAAAGCACTGCGCCAAATCACTGATGCTATAGCAGACTGCAGCCTGGCAATTGCTCTTGATGGAAATTATTTGAAGGCAATCTCTAGA CGAGCCACTTTATATGAGATGATAAGGGATTATGGACAAGCAGCTAATGATCTTCAGAGAGTGGTAGCTATTCTCATTAAGCAAGCAGAGGAGAAAACTA AACATTTTGGGCACTCTGATAGAACAACAAACTTGGCAAATGATCTAAGACAAGCTCACCTACGTCTCTCTACCATAGAAGAAGAAGCCAGAAAGGAGAT TCCTCTGAATATGTACCTCATTCTGGGAATTGAACCTTCTGCTTCAGCATCGGAAGTTAAGAAGGCATATCGCAAAGCTGCACTTAGACACCATCCTGAC AAGGCTGGTCAGTCCTTGGCAAGAAGTGATAATGTAGATGATGGCCTGTGGAAGGAGATAGGAGAAGAAGTCCACAAGGATGCTGACAGACTTTTTAAAA TGATTGGAGAGGCATATGCCATGCTTTCAGACCCTGCTAAGCGCTCGCAGTATGATCTTGAAGAAGCAATGAGGAATGACCCAAAGAAACGAAGTGGAAG CAGCACATACAGAACACATACAGAAGCTCAGAATTATCCATTTGAAAGCAGTAGTAGGAGACATTGGAAGGGGGTTTGGAGGTCACATGGTCGGTAA
AA sequence Show only first row Show all	>Potri.009G050200.1 pacid=42771911 polypeptide=Potri.009G050200.1.p locus=Potri.009G050200 ID=Potri.009G050200.1.v4.1 annot-version=v4.1 MNPSNFGNLNSGFSNSTQFSNQDPNFSSRSSSAKGGLSRPRLVKVRRQSNPQNFNANEDIWARSGFNPFRPDTSRVELGGSGSTGFDSGSGGNEAFLFGA SGSNVGFNSDSSKGIIEDLKSLRIGGGTNVNENDKSGFVFSSDGNKSFGVDESMQKLSIDDKEKVVDGESKLSANARFESGDNVGGSIGRNVGSVLSDEL EKKLNIEEAGDATNGGGSFRAEDIKKFGLKSSEKRSDIFADASENALPDRIKKLSIRDFVDTYNVNNEKDSFAFGSRESTGGYVGGENESILSRERGCKL NLGSVKGEYSSQTDMRFSSSRIFMPTVNKGDEKFHDCGDPTEFVFEGGMLGTDVGGFQVPIDQPKVDAQPIGVAGPSHAFSSSSLAGGNAFRVPPTGGLE KTDWFSFTSKQDSAGSLFVEFETPNPKGYIFTGSNPTMEFSTMFKDLKVKKKRGKLSQPVKVPLWPGQDFVDREGGSKEIPEASESYSPMDISPYQETLS DARNSRETSVASEESFTLDNQHQSTDSQPAVLNDAIDEDLVVATQQMDNEEDTKYGETKEQNSEYCSDKNIGAENYLEESISGAETESFKSANEEIDSIN DVMVASAESEASSSANLDSDLRTQFFSAVSSEDAVSSGFTFAASSTAQASPKRHHKKKNLAKVDNDSFNSSANSKGSYASSSLQFTPFSGPSSPLSPVRS KKAGSSGPSHVVGDTRELLRGQEINQGSVSASVAAQEACEKWRIRGNQAYTSGDLSKAEDCYTKGVNCVSKTETSRSCLRALMLCYSNRAATRMSLGRMR DALLDCKMAAAIDPNFLRVQVRAANCYLALGEVEDAVQYFKRCLRLGIDVRVDQKTAVEASDGLQKAQKVSECMQHAALLLKRGAPNDAESALQVIAEGL LISSYSEKLLEMKAESLFMLRKYEELIQLCEHTFDSAKKNSPPLHADYHVENLGPELTKGTSFMIWRCRFIFKSYFHLGRLEEAIVSLEKQEELTSIARS SLSRNDIETQESLVPLAATVQELLRHKAAGNEAFQAGKHSEAIEHYSAALSRNIESRPFAAICFCNRAAAYKALRQITDAIADCSLAIALDGNYLKAISR RATLYEMIRDYGQAANDLQRVVAILIKQAEEKTKHFGHSDRTTNLANDLRQAHLRLSTIEEEARKEIPLNMYLILGIEPSASASEVKKAYRKAALRHHPD KAGQSLARSDNVDDGLWKEIGEEVHKDADRLFKMIGEAYAMLSDPAKRSQYDLEEAMRNDPKKRSGSSTYRTHTEAQNYPFESSSRRHWKGVWRSHGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.009G050200 [exp]	0	1
AT5G24740			Protein of unknown function (D...		Potri.001G455600 [exp]	2.00	0.8594
AT3G04160			unknown protein		Potri.019G029400 [exp]	4.47	0.8453
AT1G77310			unknown protein		Potri.002G078800 [exp]	6.00	0.8211
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	6.00	0.8369
AT1G58230			binding (.1)		Potri.002G111000 [exp]	7.74	0.8334
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.010G019150 [exp]	8.06	0.8337
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	8.12	0.8380
AT3G22430			unknown protein		Potri.008G024500 [exp]	9.38	0.8176
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Potri.018G057200 [exp]	9.89	0.8066
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.011G142000 [exp]	12.12	0.7610

Compare expression of checked genes

Potri.009G050200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.