Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16260 284 / 8e-95 Glycosyl hydrolase superfamily protein (.1) AT3G57270 261 / 5e-86 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57240 256 / 8e-84 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT3G57260 229 / 3e-73 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT5G20340 178 / 2e-53 BG5 beta-1,3-glucanase 5 (.1) AT5G20390 178 / 2e-53 Glycosyl hydrolase superfamily protein (.1) AT5G20330 174 / 5e-52 BETAG4 "beta-1,3-glucanase 4", beta-1,3-glucanase 4 (.1) AT1G77780 173 / 2e-51 Glycosyl hydrolase superfamily protein (.1) AT5G56590 167 / 8e-48 O-Glycosyl hydrolases family 17 protein (.1) AT1G33220 156 / 4e-45 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G255100 [exp] 459 / 5e-164 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.010G143166 [exp] 276 / 4e-92 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.010G142800 [exp] 276 / 3e-91 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.016G057600 [exp] 260 / 2e-85 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057400 [exp] 250 / 2e-81 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 244 / 5e-79 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G046100 [exp] 243 / 7e-79 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.009G050401 [exp] 225 / 9e-73 AT4G16260 263 / 2e-87 Glycosyl hydrolase superfamily protein (.1) Potri.005G172000 [exp] 204 / 3e-63 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016883 [exp] 247 / 2e-80 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10002807 [exp] 239 / 4e-77 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10019801 [exp] 236 / 6e-76 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014110 [exp] 233 / 5e-75 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014109 [exp] 233 / 1e-74 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10010091 [exp] 238 / 3e-73 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10031037 [exp] 229 / 3e-73 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10014108 [exp] 233 / 3e-72 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10027860 [exp] 215 / 1e-67 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10039233 [exp] 188 / 4e-57 AT4G16260 258 / 5e-84 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.009G050300.1 pacid=42770823 polypeptide=Potri.009G050300.1.p locus=Potri.009G050300 ID=Potri.009G050300.1.v4.1 annot-version=v4.1 ATGGGGGTTTGCTGTGGAAAGAATGGAAACAATTTGCCATCCGATCAGGAAGTTGTAAGTCTTTATCAAACAAATAGTATTGGAAGGATGCGAATTTATT ATCCAAACAGAGACACACTTGAAGCCCTGAGAGGATCAAACACAGAAGTCATCCTTGGTGTCCCCAATGACAACCTTCGGGCCCTTGCTGACGCCTCAGC TGCTACAACCTGGATCCAAAACAACGTTGTAGCCTACTCATCCAATGTCAGGTTCCGCTACATTGCTGTTGGCAATGAAGTACACCCTGGAGATGCAAAT GCACGATATGTTCTACCAGCAATGCAGAACATACATGATGCAATAGTATCCGCCAACTTACAAGGTCAAATTAAGGTTTCAACGGCGATAGACACGACTT TGTTGGGCATATCCTACCCTCCATCAAAAGGGTCGTTTAGTGACAGTGCAAATCCTTACATAAGCCCTATCATCAACATCTTAAGGACCAATGATGCACC ACTTCTTGCAAATGTGTATCTCTACTTCAGATATACTGACAACCCACAAAGCATTGATCTTAACTATGCCTTATTTACTTCACCAGAAGTAGTGGTGCAA GATGGTCAATATGGATATCAGAATTTGTTTGATGCATTGTTGGATGCTCTTTATGCTGCTCTTGAGAAAGCAGGTGCCGCAAATTTGAGCATTTCTGTAT CCGAAAGTGGTTGGTCATCTGAAGGTGGAAATGCAGCAACAGCTGGCAACGCAGGAACTTTCGATAGGAATCTAATTAATCATGTGAAACAAGGGACTCC CAGAAGATCTGGAAAGGCTATAGAGACATACTTATTTGCAATGTTTGATGAGAATCTGAAGGCAGCAGGAATTGAACAACATTTTGGTCTATTCCTCCCC GACAGACAGCCCAAGTACCAACTTACTTTTGGTTGA
AA sequence Show only first row Show all	>Potri.009G050300.1 pacid=42770823 polypeptide=Potri.009G050300.1.p locus=Potri.009G050300 ID=Potri.009G050300.1.v4.1 annot-version=v4.1 MGVCCGKNGNNLPSDQEVVSLYQTNSIGRMRIYYPNRDTLEALRGSNTEVILGVPNDNLRALADASAATTWIQNNVVAYSSNVRFRYIAVGNEVHPGDAN ARYVLPAMQNIHDAIVSANLQGQIKVSTAIDTTLLGISYPPSKGSFSDSANPYISPIINILRTNDAPLLANVYLYFRYTDNPQSIDLNYALFTSPEVVVQ DGQYGYQNLFDALLDALYAALEKAGAANLSISVSESGWSSEGGNAATAGNAGTFDRNLINHVKQGTPRRSGKAIETYLFAMFDENLKAAGIEQHFGLFLP DRQPKYQLTFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16260			Glycosyl hydrolase superfamily...		Potri.009G050300 [exp]	0	1
					Potri.007G060500 [exp]	1.41	0.9313
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.007G074400 [exp]	24.20	0.9093
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.007G074466 [exp]	30.00	0.8883
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Potri.014G193800 [exp]	32.37	0.8917
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G007925 [exp]	35.49	0.8369
					Potri.016G037000 [exp]	41.85	0.8273
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.016G069500 [exp]	47.07	0.8855
AT2G35910			RING/U-box superfamily protein...		Potri.008G018900 [exp]	58.68	0.8093

Compare expression of checked genes

Potri.009G050300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.