Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51950 361 / 4e-117 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT3G21100 322 / 5e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G12440 303 / 2e-93 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT3G63450 208 / 2e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G51520 197 / 2e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G05160 147 / 2e-37 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT1G51530 74 / 7e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52980 118 / 2e-12 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G255532 [exp] 910 / 0 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.003G204300 [exp] 556 / 0 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G020300 [exp] 458 / 6e-152 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050600 [exp] 358 / 3e-114 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G255400 [exp] 355 / 7e-113 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G165500 [exp] 150 / 3e-38 AT2G05160 513 / 8e-178 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.002G221100 [exp] 146 / 6e-37 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.001G276300 [exp] 91 / 2e-20 AT5G12440 80 / 3e-17 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019044 [exp] 410 / 9e-135 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10039575 [exp] 357 / 5e-115 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10005319 [exp] 347 / 4e-111 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027351 [exp] 254 / 1e-79 AT3G21100 235 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10005023 [exp] 260 / 4e-78 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019042 [exp] 256 / 4e-76 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014915 [exp] 254 / 5e-76 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10009964 [exp] 219 / 1e-64 AT3G51950 215 / 3e-64 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027350 [exp] 200 / 2e-56 AT3G21100 327 / 4e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014914 [exp] 191 / 1e-53 AT5G12440 151 / 4e-42 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.009G050700.1 pacid=42771062 polypeptide=Potri.009G050700.1.p locus=Potri.009G050700 ID=Potri.009G050700.1.v4.1 annot-version=v4.1 ATGGATTCGTATGAAGCTACTAATATTGTGTTTTCAAGGATCCAAAGTTTGGAACCTGAAAATGCCTCAAAAATCATGGGCTACCTTCTCTTACAAGATT ATGGGGAGAAAGAGATGATACGTTTAGCCTTTGGACCAGAGACCCTTCTGCAAAATCTCATTCTCCAAACCAAAACCCAGTTGGGGTTTCCCTCAAATAC ACCATCCACACCCTCTCCAGCTTTTATTCCTTCCTCTAGACCCAGTCCTTTGTACATTTCATCTTCAAGAATACCAAACAATAATGGCTTTGACATCACA AACTCCTCGTCTCCCTCTACAAATTCCTGGCCTTTATTGAGTCCTAACTCTACTACTTCACTCTCTTATGCCAGTGTTGTTAATGGAGCCAGTAATATCA ATGCTGGTTCAACACCTTTTCAACCCACTGTCTCATTATCTAAAGCATTTTCTTACAGCAATAACAATGACAATGCTAATGATCTCGTTGATGAGTATGA ACTCCAGGAACGCTTTTCCTTTCTCAATGATTCAAAGACAGATGATTTATTTGATCCAAGGGGAGAGTTAGCCATGAGTCCACCTGCATTCGGTGATAAC AGTTTGCACAAGCGAAGTTTTTCAGTACCAGGCATGTGTTTTGGATCTGAAGATTCAAATTCCGGGTTTGGTTGGAAGCCTTGCTTGTATTTTTCAAGAG GGTTTTGCAAAAATGGCACAGGTTGCAGGTTTGTTCATGGAGATTCGGCTGATAGTGCTGCCATTGTTGGTTCACCGAGTGAACTTAATGAGTTTGAACA GTGCCAAGAAATACTTAGGTCAAAGGCTGCTGCCCAGCAAAGGAAGCTAGCCGCAGCCTCACAGTTTATGGCTGGAGCTACCTTTTTACCCCAGAATAAA TGCATGAACTTCCTTCATCAGCAACAAAATGAAAGCCAAAGATCAGCTGCAGCAGCTGCATTGATGATGGGGGATGAGATTCACAAGTTTGGAAGAATCC GGCCTGAAAGGAGTGATTTTTCGCAAATGGGATTGGGAGGTGCAATGAGCCCAAGCGCAAGACAGATCTATTTGACATTTCCTGCTGACAGTACATTTAG AGAAGAAGATGTTTCGAGTTATTTTAGCTTTTATGGGCCAGTGCAAGATGTGAGAATTCCATACCAGCAGAAGAGGATGTTTGGATTTGTTACATTTGTG TTTGCTGAGACAGTGAAGCTTATATTGGCTAAAGGGAACCCGCATTTTGTTTGTGATTCTCGTGTGCTTGTTAAGCCTTACAAGGAGAAGGGAAAAGTCC CGGACAAGAAGCATCAGCAGCAGCAACAGATTGAGAGGGAAGAGTATTCAGCTTGTCCAAGCCCATCTAGGATCAATTGTAGAGAGCCATTTGACCTCCA TCTTGGAGGTAGAATGTTTTACAATACTCAAGAAATGCTGAGAAGGAAATTAGAGGAAGAGGCTGATTTACAGCAAGCTATTGAACTCCAAGAGAGAAGG CTATTGAATCTGCAACTTCTCGACTTAAAGAATCATCGCCAACATCGATACTTCCACGGTTTGTCAACTGGGTCCCCCCTTCCTTCACCAACTATCTTGC ATAGTCCCAACAATCAAACCCTCTTTTTTCCGATCGATGGCATTGACAAAGAAGTTCAGCATGCAGAAAATGGTAGCAACCCTGATGCTGCAGCTGCGCA AAATGCGGTCGCAGATGCTGATCAGGAAGTGAGTCCAGCTTGCAATCACAACGATGGCAATGGTAATAATAGAGATAAGGAGGAGAAGTCCAACAGTGAT GAAAGTGATCTCAATGAAAATTTGGAGCATATTCTCCCGGACAATCTCTTTGGTTCTCCTAAGAAATCAGCTGGTGACAACCTCACTGTCTTCTCCACGG CTTCTGTGGAGGTTGATGACAATTCCTCAAGCCTTACTACATCTTCTCCTAACAGTAACCCCTTAGTGCCCACCACCTCTCTCAACATGACCTCTCTTAA ATCATGTTTTCTCCAAATGCCCAGGTTGTCTTCTGGGCATGGAACCGTTGGCATATAG
AA sequence Show only first row Show all	>Potri.009G050700.1 pacid=42771062 polypeptide=Potri.009G050700.1.p locus=Potri.009G050700 ID=Potri.009G050700.1.v4.1 annot-version=v4.1 MDSYEATNIVFSRIQSLEPENASKIMGYLLLQDYGEKEMIRLAFGPETLLQNLILQTKTQLGFPSNTPSTPSPAFIPSSRPSPLYISSSRIPNNNGFDIT NSSSPSTNSWPLLSPNSTTSLSYASVVNGASNINAGSTPFQPTVSLSKAFSYSNNNDNANDLVDEYELQERFSFLNDSKTDDLFDPRGELAMSPPAFGDN SLHKRSFSVPGMCFGSEDSNSGFGWKPCLYFSRGFCKNGTGCRFVHGDSADSAAIVGSPSELNEFEQCQEILRSKAAAQQRKLAAASQFMAGATFLPQNK CMNFLHQQQNESQRSAAAAALMMGDEIHKFGRIRPERSDFSQMGLGGAMSPSARQIYLTFPADSTFREEDVSSYFSFYGPVQDVRIPYQQKRMFGFVTFV FAETVKLILAKGNPHFVCDSRVLVKPYKEKGKVPDKKHQQQQQIEREEYSACPSPSRINCREPFDLHLGGRMFYNTQEMLRRKLEEEADLQQAIELQERR LLNLQLLDLKNHRQHRYFHGLSTGSPLPSPTILHSPNNQTLFFPIDGIDKEVQHAENGSNPDAAAAQNAVADADQEVSPACNHNDGNGNNRDKEEKSNSD ESDLNENLEHILPDNLFGSPKKSAGDNLTVFSTASVEVDDNSSSLTTSSPNSNPLVPTTSLNMTSLKSCFLQMPRLSSGHGTVGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G050700 [exp]	0	1
AT4G30020			PA-domain containing subtilase...		Potri.018G143400 [exp]	1.00	0.8871
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Potri.013G039000 [exp]	1.41	0.8802
AT5G04310			Pectin lyase-like superfamily ...		Potri.010G229000 [exp]	2.44	0.8798
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Potri.006G247200 [exp]	3.46	0.8529
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.011G071000 [exp]	4.69	0.8292
AT2G43990			unknown protein		Potri.007G145400 [exp]	7.48	0.8409
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.012G035900 [exp]	8.00	0.7812
AT5G65360			Histone superfamily protein (....		Potri.003G210100 [exp]	8.48	0.8428	HTR902
AT3G18490			Eukaryotic aspartyl protease f...		Potri.015G051800 [exp]	8.48	0.8365
AT3G57830			Leucine-rich repeat protein ki...		Potri.006G057500 [exp]	8.83	0.8266

Compare expression of checked genes

Potri.009G050700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.