Plant FIBer expression Database

Potri.009G050900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G127000
[exp]
139 / 6e-45 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027352
[exp]
0 / 1 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15159 PIG-Y Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Representative CDS sequence
>Potri.009G050900.2 pacid=42772072 polypeptide=Potri.009G050900.2.p locus=Potri.009G050900 ID=Potri.009G050900.2.v4.1 annot-version=v4.1
ATGGTTTTTTCTCGAATGAGATTAAGCGAAACGGCAACGTTTAGAGGATGGTTGTTTATCTTGATGGGTTCCGTTTCTTTTGTGGGATTTCTATTCGCGG
CAGTGATATCGAAGCTTCTTCCATTGTCGGACAATCCTATCATCTCTGCCATTCAAAACGACAGGTATTACTGCTTCTTGGTGCCCTTGACACTTCCTAT
CCTGGTCAGTGCTGTGTATTTTCATTGGCTTAGCATGAAGATGTTCAAACATGCATAA
AA sequence
>Potri.009G050900.2 pacid=42772072 polypeptide=Potri.009G050900.2.p locus=Potri.009G050900 ID=Potri.009G050900.2.v4.1 annot-version=v4.1
MVFSRMRLSETATFRGWLFILMGSVSFVGFLFAAVISKLLPLSDNPIISAIQNDRYYCFLVPLTLPILVSAVYFHWLSMKMFKHA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G050900
[exp]
0 1
AT2G37020 Translin family protein (.1.2) Potri.006G126200
[exp]
1.41 0.7972
AT1G60080 3'-5'-exoribonuclease family p... Potri.016G055600
[exp]
3.16 0.7887
AT5G04520 Protein of unknown function DU... Potri.010G233000
[exp]
5.74 0.7838
AT1G03650 Acyl-CoA N-acyltransferases (N... Potri.013G134102
[exp]
6.70 0.7669
AT3G52170 DNA binding (.1.2) Potri.008G029500
[exp]
7.48 0.7835
AT1G03650 Acyl-CoA N-acyltransferases (N... Potri.013G134000
[exp]
9.59 0.7405
AT3G01740 Mitochondrial ribosomal protei... Potri.001G335600
[exp]
15.65 0.7799
AT1G10865 unknown protein Potri.010G248800
[exp]
21.00 0.7453
AT5G37360 unknown protein Potri.013G050300
[exp]
21.77 0.7801
AT5G64650 Ribosomal protein L17 family p... Potri.005G061700
[exp]
24.00 0.7399

Potri.009G050900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.