Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21090 1008 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 998 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 833 / 0 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G17840 706 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT2G28070 361 / 2e-114 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT2G01320 256 / 6e-75 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G55100 244 / 4e-71 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G55130 236 / 2e-67 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G55090 235 / 3e-67 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT5G13580 230 / 1e-65 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G255800 [exp] 1211 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051300 [exp] 960 / 0 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 937 / 0 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056700 [exp] 750 / 0 AT3G21090 739 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.017G155300 [exp] 745 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 738 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.016G056600 [exp] 734 / 0 AT3G21090 744 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.005G073100 [exp] 565 / 0 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 563 / 0 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009961 [exp] 1001 / 0 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 843 / 0 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 832 / 0 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 807 / 0 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 776 / 0 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10040644 [exp] 680 / 0 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10035445 [exp] 616 / 0 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10031063 [exp] 612 / 0 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000338 [exp] 536 / 0 AT3G21090 532 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10018268 [exp] 533 / 0 AT1G17840 849 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.009G051200.5 pacid=42772326 polypeptide=Potri.009G051200.5.p locus=Potri.009G051200 ID=Potri.009G051200.5.v4.1 annot-version=v4.1 ATGGAGATAGAGGTGGCAAGTAATAGTTATGGTGGTACTGGTAATAACTTTTGTGATGGTGCTAGCAGTTGCGCGTATCAAGATAAGGTGGCGCCGGACT GTGGTGGGGAGAGGGGGGTGTATTTGGTGTGGGAGGATCTAACGGTGGTGTTACCGAATTTTGGAAATGGCCCGACAAAGAGGTTGCTTCAAGGACTTAG AGGGTATGCTGAACCAGGTAGGATCACGGCTATCATGGGTCCATCTGGGTCTGGAAAATCCACTCTTCTTGATTCACTAGCAGGTAGGCTGTCAAGAAAT GTGATAATGAGTGGAACGGTTCTCTTCAATGGGAAGAAGAGGAGGCCAGACGCTGGTGTTGCTTATGTGACACAAGAGGATGTGTTATTAGGAACTCTTA CAGTCAGAGAAACGATCACTTACTCTGCAAATTTAAGGCTTCCAAATACAATGACCAAAGGGGAGATTGATGATGTCGTAGAAGCAACAATAATGGAAAT GGGTCTCCAAGAATGTTCTGATCGGGTGGTCGGAAACTGGCATTTGAGAGGCATAAGTGGTGGTGAAAAGAAGAGATTAAGCATTGCACTAGAAATCCTG ACAAGGCCACGTCTCTTGTTTCTTGATGAACCTACAAGTGGTCTTGATAGTGCCTCAGCTTTCTTTGTAATTCAAACACTTAGAAATATAGCTCGCGATG GAAGGACGGTTATATCCTCCATTCACCAGCCAAGTAGTGAAGTTTTTGCGCTCTTTGATGATCTTTTCTTACTCTCCAGTGGTGAAACTGTATATTTTGG GGATGCAAAGATGGCTGTTGAGTGTCAATCTTCGCAGTTCTTTGCTGAAGCTGGATTTCCATGTCCAAGAAGGAAGAATCCTTCTGATCATTTCCTACGC TGCATAAATTCAGACTTTGATGCCATAACAGCTACACTGAAAGGATCTCAAAGAATTCGTGATGTCCCAAAATCAGCAGACCCTTTGATTAATTTGGCAA CAGCAGAGATCAAAGCAAGACTTGTTGAGAAATATAGGCGCTCGAATATTGCACAAAAGGTCAAAGCAAGGGTTAAGGATATATCAGCTATTGAAGGACT AGAAGTTGATATTCGAAGTGGAAGTGATGCAAGCTGGTGGAAACAACTTTCGACACTGACCCGAAGATCATTTGTGAACATGTCCAGAGATGTGGGGTAT TACTGGGCAAGGATAGTGATCTACATAGTTGTTTCCATCTGTGTTGGTACAATCTATTATGATGTTGGATATGGCTACACTGCAATCTTAGCCAGAGTAG CTTGTGGTGGATTTATAACAGGCTTCATGACTTTTATGTCTATCGGAGGCTTCCCTTCTTTCATTGAAGAAATGAAGGTCTTTTATCGAGAAAAGCTCAA TGGCTATTATGGGGTTACAGTGTTTATCCTGTCCAATTACTTATCCTCTTTCCCATTCTTGGTTTCGATCGCGCTCCTCTCCGGGACCATATGTTTTTAC TTGGTGAAATTTCGATCGGGATTTAATCATTATGTATTCTTCTGTCTCAATATCTTCGGCTCCATTTCTGTAATAGAGAGCCTGATGATGGTTATCGCTT CACTGGTCCCTAATTTCTTGATGGGACTTATTACAGGGGCCGGAATCATTGGAATCATGATGATGACCTCTGGTTTCTTCAGATTGCTGCCTGATCTTCC AAAACCATTCTGGCGCTACCCAGTTTCGTATATCAATTATGGAGCCTGGGGAATTCAGGGTGCCTACAAGAATGATTTCCTCGGACTCGAGTTTGATCCT CTAATACCTGGTGATCCAAAAATCCCTGGAGAATTTGTTATCACGCGTATGTTTGGCATTCCCCTGGATTATTCGAAGTGGTGGGATTTATCTGCTATTT ATCTTATTCTCGTATGCTATCGGATTCTTTTCTTCATCGTTCTCAAGCTCAAGGAGAGAGCTGTGCCATTCGTTGAGGATCTTTACTCTAAGAGAACCTT GCACATACTTGAGAAGAGGCCTTCCTTTAGGAAGGCACCATCTTTTTCTTCAAGGAGACATCAACCTCTTCATTCACTGTCTTCCCAGGAGGGCCTTAGC TCTCCTCTCAACTAG
AA sequence Show only first row Show all	>Potri.009G051200.5 pacid=42772326 polypeptide=Potri.009G051200.5.p locus=Potri.009G051200 ID=Potri.009G051200.5.v4.1 annot-version=v4.1 MEIEVASNSYGGTGNNFCDGASSCAYQDKVAPDCGGERGVYLVWEDLTVVLPNFGNGPTKRLLQGLRGYAEPGRITAIMGPSGSGKSTLLDSLAGRLSRN VIMSGTVLFNGKKRRPDAGVAYVTQEDVLLGTLTVRETITYSANLRLPNTMTKGEIDDVVEATIMEMGLQECSDRVVGNWHLRGISGGEKKRLSIALEIL TRPRLLFLDEPTSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSSGETVYFGDAKMAVECQSSQFFAEAGFPCPRRKNPSDHFLR CINSDFDAITATLKGSQRIRDVPKSADPLINLATAEIKARLVEKYRRSNIAQKVKARVKDISAIEGLEVDIRSGSDASWWKQLSTLTRRSFVNMSRDVGY YWARIVIYIVVSICVGTIYYDVGYGYTAILARVACGGFITGFMTFMSIGGFPSFIEEMKVFYREKLNGYYGVTVFILSNYLSSFPFLVSIALLSGTICFY LVKFRSGFNHYVFFCLNIFGSISVIESLMMVIASLVPNFLMGLITGAGIIGIMMMTSGFFRLLPDLPKPFWRYPVSYINYGAWGIQGAYKNDFLGLEFDP LIPGDPKIPGEFVITRMFGIPLDYSKWWDLSAIYLILVCYRILFFIVLKLKERAVPFVEDLYSKRTLHILEKRPSFRKAPSFSSRRHQPLHSLSSQEGLS SPLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.009G051200 [exp]	0	1
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.018G111900 [exp]	2.00	0.9554
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125151 [exp]	2.64	0.9608
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G172200 [exp]	3.46	0.9485
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111600 [exp]	4.24	0.9539
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Potri.014G099900 [exp]	4.69	0.9299	DREB56
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Potri.011G025300 [exp]	6.32	0.9487
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.006G009800 [exp]	6.92	0.9433
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.001G255800 [exp]	8.00	0.9490
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Potri.017G082500 [exp]	10.58	0.9210	Pt-MYB94.1
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Potri.013G144300 [exp]	10.67	0.9179	10,Pt-DFL2.2

Compare expression of checked genes

Potri.009G051200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.