Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21090 943 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 914 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 894 / 0 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G17840 693 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT2G28070 364 / 7e-116 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT2G01320 261 / 8e-77 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G55100 259 / 1e-76 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT2G37360 248 / 6e-72 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT5G13580 246 / 2e-71 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT4G27420 244 / 2e-71 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G255900 [exp] 1205 / 0 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 965 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 958 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056600 [exp] 752 / 0 AT3G21090 744 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056700 [exp] 749 / 0 AT3G21090 739 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.017G155300 [exp] 706 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 698 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 570 / 0 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 570 / 0 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027354 [exp] 958 / 0 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 924 / 0 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 909 / 0 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 901 / 0 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10009961 [exp] 868 / 0 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027353 [exp] 771 / 0 AT3G21090 661 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10040644 [exp] 636 / 0 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10035445 [exp] 625 / 0 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10031063 [exp] 619 / 0 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10023154 [exp] 523 / 7e-178 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.009G051300.1 pacid=42772607 polypeptide=Potri.009G051300.1.p locus=Potri.009G051300 ID=Potri.009G051300.1.v4.1 annot-version=v4.1 ATGGAGATAGAGCAGGTTGTAATTAGCAGTGGTGGAGATGGTGGCTCTGGAGGTGGGAATGCGGAGGCAGGTTTATCTGGAGGAAGAGGAGATCATGGAG TAGGGTCTATGTTCTTGGTATGGGAGGATTTAACAGTGGTTCTGCCAAATTTTGGCAATGGACCTACAAGGAGATTGCTTAATGGGCTAAATGGATACGC CGAGCCTGGTAAAATCTTGGCTATTATGGGTCCATCTGGGTCTGGGAAATCTACCCTTCTTGATGCATTAGCAGGGAGACTAGCAGGGAATGCTGTGATG ACTGGGAATGTTCTACTCAACGGGAAGAAGAGGAGACTGGACTATGGTGGTGTTGCTTATGTAACACAAGAAAACACATTGTTGGGCACTCTCACAGTTA GAGAGACCCTGAATTACTCGGCTCATTTGAGACTTCCAAGCAGCATGGCTAAAGAAGAGATAGATGACATTGTAGAGGGGACAATCATGGAAATGGGTCT CCAAGAGTGCAGTGATCGGCTGATTGGAAACTGGCATTTAAGAGGTATAAGTGGTGGGGAGAAGAAAAGACTAAGTATTGCACTTGAAATCCTCATAAGG CCACAACTTTTGTTTCTTGATGAACCTACAAGTGGCCTGGACAGTGCTGCAGCTTTCTTTGTAATTCAAACTCTTAGAAATATTGCTCGCGATGGAAGAA CCGTCATATCTTCTGTTCACCAGCCAAGTAGCGAAGTTTTCGCACTCTTTGATGACCTTTTCTTATTATCTGGTGGCGAAACAGTTTATTTTGGAGAGGC AAAGATGGCGGTAGAGTTCTTTGCTGAAGCTGGATTCCCATGTCCAAGTAGAAGAAACCCTTCTGATCATTTCTTACGTTGTATTAATTCAGACTTCGAC CTTGTCACTGCAACCCTGATGGGATCTCACAGAGAAATTCAAAATCCATCAGATTCTTTGGCAAATTTGCCAACAGCAGAGATTAAGGCATCGTTAGTCA AGAAGTACAGGTCCTCCAACCATGCAGCAAATGCAAGAGCTAGGATTCAAGAAATTGTGGCGATTAAGGGGCTTGTGGTTAATATAAGAAAAGAAAACCA AGCAAACTGGTGGAAACAACTTTCAACGTTGACAAGGAGATCTTTCATTAACATGTGGAGAGATTTGGGGTACTATTGGGTAAGGATTATCGTCTACATC TTGTTGTCTATTTGCGTCGGTACCATATTTTTAGACGTTGGCAAAGGTTATACTGCAATATTGGCCCACGGAGCTTGTGGAGGATTTCTGTCAGGATTTA TGACATTCATGTCCATTGGAGGCTTCCCCTCCTTCATTGAAGAACTGAAGGTTTTTTACAAGGAAAGGCTCAGTGGGTATTATGGGGTCGCTGTTTATGT ACTGTCAAACTTTCTCTCTTCGTTTCCCTACTTGACTGTGATGTCATTCGGCACCTCAAGTATTACCTATTACATGGTGAAGTTTCGGCCAGAATTTTCA AATTTTCTCTACGTTTTCTTCGACCTTTTAAGCAGCATAGCAACTGTGGAGAGTTGCATGATGACTATAGCTTCACTAGTCCCCAACTACCTAATGGGAT TCGTTATTGGATCAGCATATATTGGAATCCTAATGATGACCTCTGGGTTTTTCCGGTTGCTGCCTGATATTCCCAAGGTCTTCTGGCGCTACCCAATTTC TTATATCAACTTTGGATCATGGGGATTGCAGGGAGCATACAAGAACGACATGATTGGGCTGGAGTTTGATCCTTTAGTACCTGGCGGTCCAAAACTGAAA GGAGAAGAAGTTCTCACAACCGTGCTTGGTATTAGTCTTGATCATTCAAAATGGTGGGACCTGTCTGCTGTCCTGCTCATTCTCATTGCTTTCAGACTTC TCTTCTTTGCCATTCTCAAGTTCAAGGAGAGAACTCTCCCTATGCTTCGGGAGCTTCATTCCAAGAGGACTCTAAAGCATCTGAAGAAGAGGCCATCTTT CAGGAAGACTTCTTATTCACCCTTCCCTTCAAAAAGACACCAACCTGCTCATTCTTTGTCTTCTCAAGAGGGTCTCAGCTCTCCAATTCCTTACTAG
AA sequence Show only first row Show all	>Potri.009G051300.1 pacid=42772607 polypeptide=Potri.009G051300.1.p locus=Potri.009G051300 ID=Potri.009G051300.1.v4.1 annot-version=v4.1 MEIEQVVISSGGDGGSGGGNAEAGLSGGRGDHGVGSMFLVWEDLTVVLPNFGNGPTRRLLNGLNGYAEPGKILAIMGPSGSGKSTLLDALAGRLAGNAVM TGNVLLNGKKRRLDYGGVAYVTQENTLLGTLTVRETLNYSAHLRLPSSMAKEEIDDIVEGTIMEMGLQECSDRLIGNWHLRGISGGEKKRLSIALEILIR PQLLFLDEPTSGLDSAAAFFVIQTLRNIARDGRTVISSVHQPSSEVFALFDDLFLLSGGETVYFGEAKMAVEFFAEAGFPCPSRRNPSDHFLRCINSDFD LVTATLMGSHREIQNPSDSLANLPTAEIKASLVKKYRSSNHAANARARIQEIVAIKGLVVNIRKENQANWWKQLSTLTRRSFINMWRDLGYYWVRIIVYI LLSICVGTIFLDVGKGYTAILAHGACGGFLSGFMTFMSIGGFPSFIEELKVFYKERLSGYYGVAVYVLSNFLSSFPYLTVMSFGTSSITYYMVKFRPEFS NFLYVFFDLLSSIATVESCMMTIASLVPNYLMGFVIGSAYIGILMMTSGFFRLLPDIPKVFWRYPISYINFGSWGLQGAYKNDMIGLEFDPLVPGGPKLK GEEVLTTVLGISLDHSKWWDLSAVLLILIAFRLLFFAILKFKERTLPMLRELHSKRTLKHLKKRPSFRKTSYSPFPSKRHQPAHSLSSQEGLSSPIPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.009G051300 [exp]	0	1
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.010G105400 [exp]	5.09	0.9594
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008000 [exp]	7.87	0.9533
AT3G50390			Transducin/WD40 repeat-like su...		Potri.006G239600 [exp]	11.13	0.9481
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076400 [exp]	11.61	0.9471
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.015G110700 [exp]	15.55	0.9369
AT5G47000			Peroxidase superfamily protein...		Potri.007G074700 [exp]	16.97	0.9213
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.010G212600 [exp]	17.54	0.9340
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.013G102500 [exp]	19.13	0.9486
					Potri.018G132951 [exp]	19.89	0.9359
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.018G099201 [exp]	21.97	0.9224

Compare expression of checked genes

Potri.009G051300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.