Plant FIBer expression Database

Potri.009G051400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51450 401 / 5e-136 ASH2R, TRO ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G256000
[exp]
477 / 3e-166 AT1G51450 417 / 4e-142 ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014912
[exp]
409 / 1e-139 AT1G51450 456 / 1e-157 ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1)
Lus10027355
[exp]
383 / 1e-132 AT1G51450 413 / 2e-144 ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0004 Concanavalin PF00622 SPRY SPRY domain
Representative CDS sequence
>Potri.009G051400.1 pacid=42770727 polypeptide=Potri.009G051400.1.p locus=Potri.009G051400 ID=Potri.009G051400.1.v4.1 annot-version=v4.1
ATGGATTCCCTTCAAGCCACCTACAGAGAGGAAGAGGAAGAGGAAGAACAACAGCAACCCAACAACAGCATCACCAACCACAGTCCTCCCACCCCTCCTC
CTCCTCCTCCTCCTCCTCCCACCACCACCAGTAGCAGCAGTCCTATTGAACTCGAAGAACACCAAAACGGCACAGACCCACATCAAGGCGACACTGAAAT
AACTCCAATTAACAACACGACAGCCAACCAACAACCTCAACAAGAGGACGCCTTTGTATCAGCCTCTGAATCTCTCTCCGAATCAGACCACCCGACAACC
TCAAACGACACCGAGAAACCCACACCCAAATCTCCCAAAATTGAAGACACTGAAATTGAAGACGATGAAGATGAAGAAGACCCACCTCCTAAAAAACAGA
AACAACTCTCCTCTTTAACACAGAAACAAGAGCCACCCGAACCAGCGACAACTGCAGAAATCGAAAACGACAATGGAGCCAGCGAGTTCAAGAAACCAAC
CAAAATCACCCCAACAACAACAAAAAAAAAGAAGTCGAAGAAAAAGAACAACAATAATGTCTGGGTTACAAGATCCACACGCAAAGGCAAGAAAAAATCA
AAACCAAACCCGCAAAACACTCCATCAGAAGACACTGTCTTAATCACTCCAGCCCCAAGATTCCCTGACAAAAGCGACGACTCCCCAGACTTAAAAATCT
GCTTATCTAAAGTATATAAAGCAGAGAAAGTCGAATTGAGCGAAGATAGATTGAGTGCAGGGAGCGCCAAGGGGTATAGAATGGTGAGAGCTACAAGAGG
GGTATGTGAAGGAGCTTGGTATTTTGAAATTAAAGTGGTTACTTTAGGAGAAACCGGACACACACGACTTGGGTGGTCTACGGAGAAAGGGGACTTACAG
GCACCAGTTGGATATGATGGAAATAGTTTTGGGTATAGAGATATTGATGGGAGTAAAGTGCACAAGGCATTGAGGGAGAAATATGGCGAGGAAGGGTATA
AAGAGGGGGATGTCATAGGGTTTTATATTAATTTGCCGGAGGGGGGGTTGTATACTCCTAAACCTGCTCATTTGGTTTGGTATAAAGGGCAGAGGTATGT
TTGTGCTCCTGATGCTAAGGAAGATCCTCCCAAGATTGTTCCTGGAAGTGAGATATCTTTCTTCAGAAATGGAGTATGTCAAGGTGTTGCGTTCAAGGAT
TTATTTGGTGGCTGTTACTACCCTGCTGCTTCAATGTACACTCTCCCTAATCAGCCAAATTGTGTGGTCAAGTTTAACTTTGGCCCTGATTTTGAATTCT
TTCCAGAGGATTTTGGAGGACGCCAAGTTCCCAAGCCTATGATTGATGTTCCTTACCATGGGTTTGACAACCGTGCTGAAAATGGTGTGAGCGATGAGAA
GAAACATTAG
AA sequence
>Potri.009G051400.1 pacid=42770727 polypeptide=Potri.009G051400.1.p locus=Potri.009G051400 ID=Potri.009G051400.1.v4.1 annot-version=v4.1
MDSLQATYREEEEEEEQQQPNNSITNHSPPTPPPPPPPPPTTTSSSSPIELEEHQNGTDPHQGDTEITPINNTTANQQPQQEDAFVSASESLSESDHPTT
SNDTEKPTPKSPKIEDTEIEDDEDEEDPPPKKQKQLSSLTQKQEPPEPATTAEIENDNGASEFKKPTKITPTTTKKKKSKKKNNNNVWVTRSTRKGKKKS
KPNPQNTPSEDTVLITPAPRFPDKSDDSPDLKICLSKVYKAEKVELSEDRLSAGSAKGYRMVRATRGVCEGAWYFEIKVVTLGETGHTRLGWSTEKGDLQ
APVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGLYTPKPAHLVWYKGQRYVCAPDAKEDPPKIVPGSEISFFRNGVCQGVAFKD
LFGGCYYPAASMYTLPNQPNCVVKFNFGPDFEFFPEDFGGRQVPKPMIDVPYHGFDNRAENGVSDEKKH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G51450 ASH2R, TRO ARABIDOPSIS Ash2 RELATIVE, TRA... Potri.009G051400
[exp]
0 1
AT1G77180 SKIP chromatin protein family (.1.2... Potri.018G086100
[exp]
1.41 0.9023
AT4G25210 GeBP DNA-binding storekeeper protei... Potri.009G088400
[exp]
1.73 0.9012
AT5G62030 diphthamide synthesis DPH2 fam... Potri.019G041300
[exp]
2.00 0.8999
AT2G19270 unknown protein Potri.006G075000
[exp]
3.60 0.9073
AT5G06160 ATO ATROPOS, splicing factor-relat... Potri.015G017200
[exp]
5.91 0.8771
AT3G61370 Protein of unknown function (D... Potri.016G069200
[exp]
8.06 0.8999
AT2G17670 Tetratricopeptide repeat (TPR)... Potri.005G103300
[exp]
8.12 0.8960
AT1G31870 unknown protein Potri.003G087200
[exp]
9.16 0.8474
AT4G21350 PUB8, B80 plant U-box 8 (.1) Potri.011G033300
[exp]
9.79 0.8603
AT3G18790 unknown protein Potri.017G060200
[exp]
12.00 0.8099

Potri.009G051400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.